| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4547372 | 3 (0.080) | 15 (0.500) | 11/82 | NT | 82.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 4 (0.130) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
AGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAA > W3110S.gb/4547308‑4547439 | agGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt < 1:1567006/69‑1 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc < 1:188216/69‑1 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact > 1:1968567‑M1/1‑61 (MQ=255) aaacgagtttgacttccaacactgcacagtcttcccccaaaagatgaaacatTTGGGGCCAAACTGTc > 1:1513411‑M1/53‑68 (MQ=255) aaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTc > 1:1691343‑M1/53‑68 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact > 1:2595029‑M1/1‑60 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact > 1:1688816‑M1/1‑60 (MQ=255) ttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcata < 1:2547200‑M1/68‑13 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcataga > 1:282027‑M1/1‑54 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCata < 1:3099382‑M1/25‑1 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCata < 1:2098942‑M1/25‑1 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCata < 1:3310625‑M1/25‑1 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtcttgact < 1:476387‑M1/57‑9 (MQ=255) gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaa < 1:55442‑M1/69‑33 (MQ=255) gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggaca < 1:636103‑M1/68‑32 (MQ=255) gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataa < 1:2532962/54‑1 (MQ=255) cacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaataa < 1:2009784‑M1/30‑1 (MQ=255) tttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCa > 1:757711‑M1/23‑40 (MQ=255) tttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCa > 1:2659903‑M1/23‑40 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgaggacaaacttt > 1:2748578‑M1/1‑31 (MQ=255) aaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaac < 1:1935853‑M1/64‑35 (MQ=255) aCAAATAAATACAAGACAATTGGGGCCAttttgactcata < 1:3309985‑M1/40‑13 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAttttgactcatagag < 1:1687999‑M1/42‑16 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAttttgactcatagag < 1:2523806‑M1/42‑16 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCaa < 1:1953864‑M1/48‑1 (MQ=255) aagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATaaaaa > 1:2046819‑M1/13‑69 (MQ=255) aaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa > 1:911516‑M1/7‑62 (MQ=255) aGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttgg > 1:2738734‑M1/1‑15 (MQ=255) aGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttgg > 1:1111791‑M1/1‑15 (MQ=255) aaCATTTGGGGCGTAACTGTCCATATCTTAAATTAGt < 1:395882/36‑1 (MQ=12) acatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAATATTaaaa > 1:359835‑M1/5‑69 (MQ=255) acatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAATATTaaaa > 1:1517749‑M1/5‑69 (MQ=255) atTAGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAATATTaaaaa < 1:260258‑M1/66‑1 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa < 1:167749‑M1/69‑60 (MQ=255) ttGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttat > 1:2359800‑M1/1‑9 (MQ=255) TGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt > 1:2474910‑M1/1‑41 (MQ=255) TGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt > 1:1561251‑M1/1‑41 (MQ=255) GGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAATATTAAAAAACGa < 1:1928233‑M1/68‑1 (MQ=255) GGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAATATTAAAAAACGa < 1:3276384‑M1/68‑1 (MQ=255) gCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattct > 1:1652719‑M1/1‑4 (MQ=255) cAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctat > 1:1589259‑M1/1‑2 (MQ=255) CAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAATATTAAAAAACGACaaaa < 1:1554443‑M1/68‑1 (MQ=255) | AGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAA > W3110S.gb/4547308‑4547439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |