| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4547372 | 3 (0.080) | 15 (0.500) | 11/82 | NT | 82.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 4 (0.130) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
ATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAA > W3110S.gb/4547602‑4547734 | aTAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg > 1:1589259‑M2/1‑67 (MQ=255) aGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggc > 1:1652719‑M2/1‑65 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaat < 1:167749‑M2/69‑11 (MQ=255) ccAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtct > 1:1111791‑M2/1‑54 (MQ=255) ccAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtct > 1:2738734‑M2/1‑54 (MQ=255) aaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtt < 1:1418639/69‑1 (MQ=255) aTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaa > 1:2359800‑M2/1‑47 (MQ=255) aaaGTTTGTCCTCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttt > 1:2748578‑M2/1‑37 (MQ=255) gTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgttt < 1:1935853‑M2/64‑31 (MQ=255) ttGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaac < 1:55442‑M2/69‑38 (MQ=255) tGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaac < 1:636103‑M2/68‑38 (MQ=255) ccTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaa < 1:67856/47‑1 (MQ=255) ccTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaa < 1:743061/47‑1 (MQ=255) ccTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaa < 1:3202886/47‑1 (MQ=255) ctctATGAGTCAAAAtggccccaattgtcttgtatttatttg < 1:1687999‑M2/42‑28 (MQ=255) ctctATGAGTCAAAAtggccccaattgtcttgtatttatttg < 1:2523806‑M2/42‑28 (MQ=255) tctATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagtt > 1:282027‑M2/1‑14 (MQ=255) tATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaa < 1:2547200‑M2/68‑57 (MQ=255) tATGAGTCAAAAtggccccaattgtcttgtatttatttgt < 1:3309985‑M2/40‑29 (MQ=255) aGTCAAGAtggccccaattgtcttgtatttatttgtttttttaactttattatcaat < 1:476387‑M2/57‑50 (MQ=255) aGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaa > 1:1968567‑M2/1‑8 (MQ=255) aGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatca > 1:1688816‑M2/1‑8 (MQ=255) aGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatca > 1:2595029‑M2/1‑8 (MQ=255) aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAg > 1:828463/1‑44 (MQ=255) aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAg > 1:3520528/1‑44 (MQ=255) aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAg > 1:678158/1‑44 (MQ=255) aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAg > 1:605134/1‑44 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaa < 1:829817/68‑1 (MQ=255) | ATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAA > W3110S.gb/4547602‑4547734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |