| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2855747 | 45 (1.210) | 8 (0.220) | 6/98 | NT | 15.4% | intergenic (‑285/‑2) | ygbA/mutS | hypothetical protein/methyl‑directed mismatch repair protein |
| ? | W3110S.gb | 4124505 = | 44 (1.210) | coding (1/837 nt) | dam | DNA adenine methylase | |||||
GCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC > W3110S.gb/4124439‑4124571 | gCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATCAGTTAGTCAGCa > 1:3069635/1‑67 (MQ=255) gcgcTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATCAGTTAGTCAGCATGAAGaaaa < 1:843572/69‑1 (MQ=255) tGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATCAGTTAGTCAGCATGAAGAAAAATCGCGCt < 1:2327480/69‑1 (MQ=255) tGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATCAGTTAGTCAGCATGAAGAAAAATCGCGCt < 1:811527/69‑1 (MQ=255) cGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATCAGTTAGTCAGCATGAAGAAAAATTGCGCttt < 1:2626417/65‑1 (MQ=255) cGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATCAGTTAGTCAGCATGAAGAAAAATCGCGCttt < 1:908727/65‑1 (MQ=255) cGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATCAGTTAGTCAGCATGAAGAAAAATCGCGCttt < 1:2775663/65‑1 (MQ=255) tgAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:685203/67‑1 (MQ=255) ggAGCTTTCTCCACAGCCGGAGACGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGa < 1:495391/69‑1 (MQ=255) ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:87298/68‑1 (MQ=255) ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:3405984/68‑1 (MQ=255) ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:3635947/68‑1 (MQ=255) ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:623568/68‑1 (MQ=255) ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:2025143/68‑1 (MQ=255) ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:2644966/68‑1 (MQ=255) ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATCAGTTAGTCAGCATGAAGAAAAATCGCTCTTTTTTGa < 1:1630233/69‑1 (MQ=255) ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATCAGTTAGTCAGCATGAAGAAAAATCGCGCttttt > 1:399727/1‑66 (MQ=255) ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATCAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:3302632/68‑1 (MQ=255) ttCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCt > 1:950212/1‑56 (MQ=255) tctcCACAGCCGGAGAAGGTGTAATCAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc > 1:3259147/1‑69 (MQ=255) cacaGCCGGAGAAGGTGTAATCAGTTAGTCAGCAt < 1:250196/35‑1 (MQ=255) cacaGCCGGAGAAGGTGTAATCAGTTAGTCAGCAt < 1:3102101/35‑1 (MQ=255) taatttaatatcagtaaaccggacataacccATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgggg > 1:430618‑M2/32‑68 (MQ=255) taatttaatatcagtaaaccggacataacccATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgggg > 1:3471435‑M2/32‑68 (MQ=255) caGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaa > 1:2204652/1‑41 (MQ=255) caGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaa < 1:1642623/41‑1 (MQ=255) aGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:442717/54‑1 (MQ=255) aGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:833694/54‑1 (MQ=255) aGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:852894/54‑1 (MQ=255) aGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGa > 1:267253/1‑55 (MQ=255) aGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGa > 1:1263537/1‑55 (MQ=255) atttaatatcagtaaaccggacataacccATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:808827‑M2/31‑1 (MQ=255) atttaatatcagtaaaccggacataacccATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCa < 1:2134477‑M2/40‑1 (MQ=255) cGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg < 1:2243290/69‑1 (MQ=255) taatatcagtaaaccggacataacccATGAAGAAAAATCGCGCttt < 1:968154‑M2/20‑1 (MQ=255) ggAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg < 1:1170551/68‑1 (MQ=255) ggAGAAGGTGTAATCAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGt < 1:876234/69‑1 (MQ=255) ggAGAAGGTGTAATCAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGt < 1:1051764/69‑1 (MQ=255) ggAGAAGGTGTAATCAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGt < 1:2619111/69‑1 (MQ=255) atatcagtaaaccggacataacccATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTa < 1:1162505‑M2/44‑1 (MQ=255) aaGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGa > 1:1595168/1‑47 (MQ=255) aaGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGa > 1:200191/1‑47 (MQ=255) tgtAATCAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTg < 1:3596797/69‑1 (MQ=255) gtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGc > 1:1196325/1‑69 (MQ=255) gtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGc > 1:1422332/1‑69 (MQ=255) gtAATCAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGaa < 1:1069115/43‑1 (MQ=255) gtAATCAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGaa < 1:1148459/43‑1 (MQ=255) gtAATCAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGaa < 1:891304/43‑1 (MQ=255) ttagttagTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc > 1:246412/1‑45 (MQ=255) ttagttagTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc > 1:397650/1‑45 (MQ=255) ttagttagTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc > 1:3530330/1‑45 (MQ=255) ttagttagTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc > 1:3433964/1‑45 (MQ=255) ccggacataacccATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtg < 1:890949‑M2/55‑1 (MQ=255) ggacataacccATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatg < 1:438177‑M2/58‑1 (MQ=255) agttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat > 1:3103396/1‑68 (MQ=255) aacccATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:3185449‑M2/64‑1 (MQ=255) cAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:3247990/68‑1 (MQ=255) cAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:3419400/68‑1 (MQ=255) cAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:1819714/68‑1 (MQ=255) cAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:1807785/68‑1 (MQ=255) cAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:2739029/68‑1 (MQ=255) cAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:3438223/68‑1 (MQ=255) acccATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaa > 1:362282‑M2/5‑69 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga > 1:1930674/1‑62 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga > 1:901342/1‑62 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga > 1:3647649/1‑62 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtg < 1:3189450/58‑1 (MQ=255) cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAc > 1:951531‑M2/2‑68 (MQ=255) cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAc > 1:598429‑M2/2‑68 (MQ=255) | GCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC > W3110S.gb/4124439‑4124571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |