| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 19 (0.650) | 39 (1.410) +TCA |
23/94 | NT | 81.4% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 124 total aligned reads displayed.
GTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAA > W3110S.gb/314384‑314522 | cactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTc < 1:2349530‑M1/2‑1 (MQ=255) tttGGTAAAGATAAGCCCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctct < 1:1062193/71‑1 (MQ=255) ctttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTc < 1:1011927‑M1/2‑1 (MQ=255) ctttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCt < 1:1811764‑M1/3‑1 (MQ=255) atggaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCtt < 1:1491270‑M1/4‑1 (MQ=255) ttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTAc < 1:1484312‑M1/6‑1 (MQ=255) ttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCATAc < 1:1444003‑M1/6‑1 (MQ=255) tctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTAcc < 1:2737480‑M1/7‑1 (MQ=255) tataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:479394‑M1/59‑71 (MQ=255) cttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCaa > 1:1134361‑M1/59‑71 (MQ=255) ttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTAc > 1:589753‑M1/58‑63 (MQ=255) ataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa < 1:2223351‑M1/13‑1 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATa > 1:2105182‑M1/57‑71 (MQ=255) cgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAAt > 1:131596‑M1/56‑69 (MQ=255) cgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAAt > 1:446038‑M1/56‑69 (MQ=255) cgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAAt > 1:1660752‑M1/56‑69 (MQ=255) aGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAg > 1:1613849/1‑71 (MQ=255) tccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTg > 1:1867179‑M1/54‑71 (MQ=255) tccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTg > 1:2360194‑M1/54‑71 (MQ=255) gttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTg < 1:1604133‑M1/18‑1 (MQ=255) ttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa < 1:2212253‑M1/13‑1 (MQ=255) ttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATa < 1:2114013‑M1/15‑1 (MQ=255) ttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGa < 1:795395‑M1/20‑1 (MQ=255) agatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGacac < 1:290725‑M1/23‑1 (MQ=255) gACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTAcc < 1:2272810/51‑1 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATa < 1:907612‑M1/15‑1 (MQ=255) ccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTa < 1:2545243/71‑1 (MQ=255) cgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTa > 1:2319590‑M1/41‑70 (MQ=255) ccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCt > 1:46573‑M1/39‑67 (MQ=255) tgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:2465046‑M1/38‑50 (MQ=255) tgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:976255‑M1/38‑50 (MQ=255) aTGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:1151202/70‑1 (MQ=255) atcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAg < 1:1799258‑M1/16‑1 (MQ=255) tcgttctggatagcagagaagtgtacgaacactgat > 1:304652‑M1/36‑36 (MQ=255) tcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:1755264‑M1/36‑71 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAg > 1:1949175/1‑66 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:2412216/1‑70 (MQ=255) gttctggatatcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:883503‑M1/34‑71 (MQ=255) gttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:19621‑M1/34‑71 (MQ=255) ttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:1645321‑M1/33‑71 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTTAGTa < 1:1249480/69‑1 (MQ=255) ccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc > 1:1495741‑M1/31‑71 (MQ=255) tCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAct > 1:1745289/1‑71 (MQ=255) ttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTa > 1:1430475‑M1/27‑56 (MQ=255) tttcagcgaggcccgggatcactgaTCTTACCCAGCAATa < 1:1660310‑M1/15‑1 (MQ=255) ccGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAAt < 1:2796621/39‑1 (MQ=255) ccGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAAt < 1:2159373/39‑1 (MQ=255) ccGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGt < 1:969055/42‑1 (MQ=255) ccGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc < 1:396374/68‑1 (MQ=255) ttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcag < 1:2173271‑M1/47‑1 (MQ=255) gcagagaagtgtacgaacactgaTCTTACCCAGCAATAg < 1:2277907‑M1/16‑1 (MQ=255) gagaagtgtacgaacactgaTCTTACCCAGCAATAGTg < 1:1724924‑M1/18‑1 (MQ=255) gagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:2169588‑M1/48‑1 (MQ=255) gagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:2774009‑M1/48‑1 (MQ=255) tGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:2669064/71‑1 (MQ=255) agaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:136195‑M1/20‑71 (MQ=255) gaagtgtacgaacactgaTCTTACCCAGCAATAGTGGac > 1:2226113‑M1/19‑39 (MQ=255) aCCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg > 1:254999/1‑71 (MQ=255) agtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:2153547‑M1/17‑71 (MQ=255) agtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:2384715‑M1/17‑71 (MQ=255) agtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:656387‑M1/17‑71 (MQ=255) gcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg < 1:2203417‑M1/54‑1 (MQ=255) tataCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:2776183/52‑1 (MQ=255) cacgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTg < 1:1278587‑M1/56‑1 (MQ=255) tacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCt > 1:2297091‑M1/13‑41 (MQ=255) tacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCt > 1:2529624‑M1/13‑41 (MQ=255) tacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:1965391‑M1/59‑1 (MQ=255) tacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:2049660‑M1/59‑1 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa < 1:2445501‑M1/35‑1 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:2283854‑M1/40‑1 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:201850‑M1/11‑62 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTC‑‑TCAGAGGTGACTcaca > 1:2739487‑M1/11‑71 (MQ=255) cgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:1674124‑M1/61‑1 (MQ=255) gCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:1579130/1‑70 (MQ=255) atcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:655896‑M1/9‑46 (MQ=255) atcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca < 1:918370‑M1/63‑1 (MQ=255) cAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:461403/71‑1 (MQ=40) acactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac > 1:507262‑M1/8‑69 (MQ=255) acactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac > 1:1841512‑M1/8‑69 (MQ=255) gTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:947915/43‑1 (MQ=255) gTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:1439901/43‑1 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa > 1:1437752‑M1/6‑45 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGaggtcgg < 1:1766236‑M1/58‑4 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg < 1:1159357‑M1/54‑1 (MQ=255) actgaTCTTACCCAGAGATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca < 1:1325039‑M1/50‑1 (MQ=255) tGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:2436998/42‑1 (MQ=40) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:1667381‑M1/66‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:1604356‑M1/4‑55 (MQ=255) tgaTCTTACCCAGCAATAGTGGAAACGCGGCTAAGTGAGTaaa < 1:951168‑M1/40‑1 (MQ=255) gCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtc > 1:152202/1‑52 (MQ=35) gCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTAACTCACATGAc > 1:20977/1‑70 (MQ=25) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa < 1:2258189‑M1/68‑1 (MQ=255) ccTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 1:228048/1‑70 (MQ=33) ccTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 1:494369/1‑70 (MQ=33) ccTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 1:1372629/1‑70 (MQ=33) ctctTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaa < 1:492228/71‑1 (MQ=31) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:1358063‑M1/2‑52 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:885681‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:2481319‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:1395426‑M1/69‑1 (MQ=255) | GTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAA > W3110S.gb/314384‑314522 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |