| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 19 (0.650) | 39 (1.410) +TCA |
23/94 | NT | 81.4% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 105 total aligned reads displayed.
AGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920212‑3920348 | cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacact > 1:807452‑M2/67‑70 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac < 1:936017‑M2/4‑1 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt > 1:2294955‑M2/66‑71 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt < 1:1776106‑M2/6‑1 (MQ=255) gACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga > 1:841280‑M2/1‑68 (MQ=255) gACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga > 1:2070289‑M2/1‑68 (MQ=255) tccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATc < 1:1118644‑M2/7‑1 (MQ=255) cacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:2349530‑M2/71‑6 (MQ=255) cacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:2296612‑M2/71‑6 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATc > 1:752611‑M2/62‑68 (MQ=255) cTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct < 1:1811764‑M2/70‑7 (MQ=255) cTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:1011927‑M2/69‑6 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:1484312‑M2/71‑10 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcatac < 1:1444003‑M2/71‑10 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:2737480‑M2/71‑11 (MQ=255) acaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTagag > 1:807527‑M2/58‑71 (MQ=255) caatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGc > 1:31148‑M2/57‑71 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtatccatattacgtgggtaggatcACACATCTTTAGAGCCAt < 1:81088‑M2/18‑1 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:2610119‑M2/53‑63 (MQ=255) cTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:1134361‑M2/1‑55 (MQ=255) ttCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac > 1:589753‑M2/1‑54 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:586309‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:131596‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:1660752‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:446038‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat < 1:1776997‑M2/56‑5 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:2354496‑M2/24‑1 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:1867179‑M2/1‑50 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:2360194‑M2/1‑50 (MQ=255) caagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg > 1:1916229‑M2/46‑69 (MQ=255) aagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAg > 1:2176178‑M2/45‑71 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATc < 1:1509383‑M2/7‑1 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:2243888‑M2/28‑1 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac < 1:290725‑M2/71‑27 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:1343351‑M2/37‑47 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggct > 1:46573‑M2/1‑35 (MQ=255) ggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaa < 1:766432‑M2/40‑1 (MQ=255) ggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaa > 1:633155‑M2/31‑70 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:1799258‑M2/52‑20 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgag > 1:1755264‑M2/1‑32 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat > 1:304652‑M2/1‑32 (MQ=255) gTTCTGGATATCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:883503‑M2/1‑30 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:19621‑M2/1‑30 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa > 1:1645321‑M2/1‑29 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTg > 1:1500287‑M2/25‑71 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg > 1:2456738‑M2/23‑46 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:920402‑M2/23‑48 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:531360‑M2/21‑46 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAg > 1:722489‑M2/21‑47 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:228430‑M2/18‑40 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:466990‑M2/18‑40 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTCAgg > 1:2480357‑M2/18‑42 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:1452560‑M2/24‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:472859‑M2/17‑36 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:2424084‑M2/17‑39 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagc > 1:2603967‑M2/17‑52 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:734368‑M2/17‑51 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:2754576‑M2/17‑71 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGt > 1:851287‑M2/17‑70 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTCTCAGCGtt > 1:2777583‑M2/17‑71 (MQ=255) gCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:2277907‑M2/39‑20 (MQ=255) agagAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:1614568‑M2/1‑18 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg > 1:869986‑M2/15‑70 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt < 1:2774009‑M2/68‑52 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt > 1:1541929‑M2/1‑17 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt < 1:2169588‑M2/68‑52 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtg < 1:1724924‑M2/38‑22 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga > 1:136195‑M2/1‑16 (MQ=255) aGTGTACGAACACtgatcttaccgagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:2545309‑M2/1‑13 (MQ=255) aGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:2450757‑M2/1‑13 (MQ=255) aGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:2153547‑M2/1‑13 (MQ=255) aGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:2384715‑M2/1‑13 (MQ=255) aGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:656387‑M2/1‑13 (MQ=255) aGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctc > 1:2272267‑M2/1‑13 (MQ=255) aggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt > 1:935329‑M2/7‑70 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:1965391‑M2/71‑63 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:2049660‑M2/71‑63 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggct > 1:2529624‑M2/1‑9 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggct > 1:2297091‑M2/1‑9 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAtttt > 1:1267770‑M2/6‑70 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTa > 1:2676356‑M2/6‑71 (MQ=255) gatcACACATCTTTTGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:2305170‑M2/67‑1 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:2582825‑M2/67‑1 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:1674124‑M2/71‑65 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCtt > 1:2519416‑M2/3‑47 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:2157182‑M2/3‑71 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:1482158‑M2/3‑71 (MQ=255) gAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:381543‑M2/1‑6 (MQ=255) cACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:632091‑M2/2‑70 (MQ=255) atcactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcaca < 1:918370‑M2/69‑67 (MQ=255) atcactgatcttacccagcaatagtggacacgcggctaagtgagta > 1:655896‑M2/3‑5 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:2020296‑M2/1‑4 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcac > 1:507262‑M2/1‑4 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcac > 1:1841512‑M2/1‑4 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATa > 1:317351‑M2/1‑71 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtcgg < 1:1766236‑M2/63‑62 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagagg < 1:1159357‑M2/59‑58 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaa > 1:1437752‑M2/1‑2 (MQ=255) actgatcttacccagagatagtggacacgcggctaagtgagtaaactctcagtca < 1:1325039‑M2/55‑54 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:83779‑M2/1‑1 (MQ=255) | AGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920212‑3920348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |