Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4547669	4547677	9	25 [0]	[0] 31	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin

AAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA  >  W3110S.gb/4547612‑4547744                                                                   |                                                                   ttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaa                                                                    >  1:1903939‑M2/67‑67 (MQ=255) ttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaa                                                                    >  1:2296733‑M2/67‑67 (MQ=255)      atatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCAt                                                            <  1:2209990‑M2/9‑1 (MQ=255)         tttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCtt                                                         <  1:474392‑M2/12‑1 (MQ=255)          tttttatgcttgagaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCtttt                                                       >  1:1609350‑M2/58‑71 (MQ=255)            tttatgcttgagaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTgg                                                     >  1:2513802‑M2/56‑71 (MQ=255)                    gagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAAc                                             >  1:1280504‑M2/48‑71 (MQ=255)                         aaaatacgtaacttttttatgatatggacagtttggccccaaATGTTTCAt                                                            <  1:136386‑M2/9‑1 (MQ=255)                         aaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATc                                                           >  1:1998255‑M2/43‑52 (MQ=255)                         aaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgtg                                         >  1:333686‑M2/43‑70 (MQ=255)                           aatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAg                                      <  1:742038‑M2/31‑1 (MQ=255)                           aatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAg                                      >  1:2638222‑M2/41‑71 (MQ=255)                                 taacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgg                                >  1:777638‑M2/35‑71 (MQ=255)                                      tatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaaaa                                              >  1:697854‑M2/30‑52 (MQ=255)                                      tatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt                            >  1:248180‑M2/30‑70 (MQ=255)                                      tatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt                            >  1:2578926‑M2/30‑70 (MQ=255)                                      tatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt                            >  1:1097418‑M2/30‑70 (MQ=255)                                      tatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt                            >  1:1327946‑M2/30‑70 (MQ=255)                                        tttatgatatggacagtttggccccaaATGTTTCATCTTTTg                                                      <  1:2070040‑M2/15‑1 (MQ=255)                                        tttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa                          <  1:609499‑M2/43‑1 (MQ=255)                                                 tggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa                >  1:519084‑M2/19‑71 (MQ=255)                                                 tggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa                >  1:1542136‑M2/19‑71 (MQ=255)                                                    acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa             <  1:2135651‑M2/56‑1 (MQ=255)                                                    acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa             <  1:202625‑M2/56‑1 (MQ=255)                                                     cagtttggccccaaATGTTTCATCTTTTGGGGGaa                                                <  1:707657‑M2/21‑1 (MQ=255)                                                       gtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAg                                      <  1:1726312‑M2/31‑1 (MQ=255)                                                       gtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGc                               <  1:2739158‑M2/38‑1 (MQ=255)                                                       gtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGc                               <  1:806639‑M2/38‑1 (MQ=255)                                                         ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt                                  >  1:1355510‑M2/11‑45 (MQ=255)                                                               ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa  <  1:2685915‑M2/67‑1 (MQ=255)                                                               ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa  <  1:2704885‑M2/67‑1 (MQ=255)                                                                   |                                                                   AAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA  >  W3110S.gb/4547612‑4547744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑