| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2018571 = | 0 (0.000) | 24 (1.090) | 8/106 | NT | 100% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
GCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2018642‑2018571‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > W3110S.gb/2519723‑2519790 GCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCC > 1:63333/1‑71GCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACGTTACAGCCGCCAGGATGGAGGGTGGGATCGCC > 1:153729/1‑71 CGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCT < 1:1813902/71‑1 CGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTGAGG > 1:1210538/1‑71 TCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGT < 1:872143/71‑1 TCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGT < 1:771341/71‑1 TCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGT < 1:685321/71‑1 TCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGT < 1:622772/71‑1 TCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGT < 1:196708/71‑1 GGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTAT < 1:1001332/71‑1 TTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGA > 1:1901364/1‑71 TTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGA > 1:1903657/1‑71 TGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGG > 1:1121610/1‑37 ttGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:28049/69‑1 TGGTATCGCCCATAAGCTCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:878725/71‑1 TGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:1960323/71‑1 TGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:1792009/71‑1 TGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:220411/71‑1 TGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:393480/71‑1 TGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:408703/71‑1 TGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT > 1:499878/1‑71 TGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:1705498/71‑1 TGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:719107/71‑1 TGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:1382121/71‑1 TGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:869045/71‑1 TGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCC > 1:1180121/1‑45 acaCCCATAAGCGCTAACTTAAGGGTTGTGGTATAACGCCTGATATCATTTAACGTGCCGATGAATAACTC > 1:1706919/4‑71 CCCATAAGCGCTAACTTGAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > 1:919583/1‑71 CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > 1:1406753/1‑71 GCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2018642‑2018571‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > W3110S.gb/2519723‑2519790 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |