New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	2018571 =	0 (0.000)	24 (1.090)	8/106	NT	100%	coding (567/687 nt)	fliH	flagellar biosynthesis protein
	?	W3110S.gb	2519723 =	NA (NA)					intergenic (+33/‑54)	nupC/insL	nucleoside (except guanosine) transporter/predicted transposase

CCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACG  >  W3110S.gb/2018503‑2018632                                                                     |                                                              tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg                                                             >  1:1406753‑M1/69‑71 (MQ=255) tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaaccctcaagttagcgcttatggg                                                             >  1:919583‑M1/69‑71 (MQ=255)    gagttattcatcggcacgttaaatgatatcaggcgttataccacaacccttaagttagcgcttatgggtgt                                                          >  1:1706919‑M1/66‑68 (MQ=255)         attcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGatccaa                                                     <  1:28049‑M1/11‑3 (MQ=255)         attcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCa                                                     <  1:719107‑M1/11‑1 (MQ=255)         attcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCa                                                     <  1:869045‑M1/11‑1 (MQ=255)         attcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCa                                                     >  1:499878‑M1/61‑71 (MQ=255)         attcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCa                                                     <  1:408703‑M1/11‑1 (MQ=255)         attcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCa                                                     <  1:393480‑M1/11‑1 (MQ=255)         attcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCa                                                     <  1:220411‑M1/11‑1 (MQ=255)         attcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCa                                                     <  1:1960323‑M1/11‑1 (MQ=255)         attcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCa                                                     <  1:1792009‑M1/11‑1 (MQ=255)         attcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCa                                                     <  1:1705498‑M1/11‑1 (MQ=255)         attcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCa                                                     <  1:1382121‑M1/11‑1 (MQ=255)         attcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagagcttatGGGCGATACCa                                                     <  1:878725‑M1/11‑1 (MQ=255)                                tcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTaaa                              >  1:1903657‑M1/38‑71 (MQ=255)                                tcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTaaa                              >  1:1901364‑M1/38‑71 (MQ=255)                                   ggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCa                                                     >  1:1180121‑M1/35‑45 (MQ=255)                                         ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc                     <  1:1001332‑M1/43‑1 (MQ=255)                                           accacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGa                   <  1:872143‑M1/45‑1 (MQ=255)                                           accacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGa                   <  1:771341‑M1/45‑1 (MQ=255)                                           accacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGa                   <  1:196708‑M1/45‑1 (MQ=255)                                           accacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGa                   <  1:685321‑M1/45‑1 (MQ=255)                                           accacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGa                   <  1:622772‑M1/45‑1 (MQ=255)                                                  cccttaagttagcgcttatGGGCGATCCCACCCTCCa                                              >  1:1121610‑M1/20‑37 (MQ=255)                                                   cctcaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCg           >  1:1210538‑M1/19‑71 (MQ=255)                                                            agcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACg  <  1:1813902‑M1/62‑1 (MQ=255)                                                                     |                                                              CCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACG  >  W3110S.gb/2018503‑2018632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.