| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 576000 = | 0 (0.000) | 42 (1.140) | 4/114 | 0.2 | 100% | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin |
| ? | W3110S.gb | 654213 = | NA (NA) | coding (70/477 nt) | dcuC | anaerobic C4‑dicarboxylate transport | |||||
AAAAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/576063‑576000‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaaGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT > W3110S.gb/654213‑654275 AAAAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAA < 1:105012/64‑1AAAAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAA < 1:2936116/64‑1AAAAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAA < 1:328510/64‑1AAAAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAA < 1:2723254/64‑1AAAAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAA < 1:2211891/64‑1AAAAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAA < 1:888307/64‑1 AAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGA > 1:1366532/1‑65 AAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGA > 1:293285/1‑65 AAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGA > 1:3037056/1‑65 AAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGA > 1:2822780/1‑65 AAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGA > 1:990707/1‑65 AAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGA > 1:1492742/1‑65 AAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGA > 1:2389430/1‑65 AAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGA > 1:1757498/1‑65 AAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGA > 1:1156134/1‑65 GATGAAAAAATTAACTGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACA < 1:925322/64‑1 GATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACA < 1:2044162/64‑1 GATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACA < 1:566948/64‑1 GATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACA < 1:629856/64‑1 GATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACA < 1:1329152/64‑1 GATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACA < 1:2336125/64‑1 GATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACA < 1:239516/64‑1 GATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACA < 1:369368/64‑1 GATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACA < 1:7121/64‑1 GATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACA < 1:1795696/64‑1 GATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACA < 1:1778727/64‑1 GATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACA < 1:823720/64‑1 ATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACA < 1:1901930/63‑1 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:2400065/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:1367969/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:2884945/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:2994341/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:3002817/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:887161/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:1119251/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:240507/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:1957368/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:1637731/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:817342/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:2364794/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:533332/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:57070/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:609848/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:689322/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:643082/1‑65 CTGTAGCTGCATCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGA > 1:2377951/1‑49 CTGTAGCTGCATCAGTACTAAGGAAGGTGAGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 1:1393597/1‑65 TCAGTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAG < 1:480426/65‑1 CTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGATCCATAGAACAG < 1:2844487/64‑1 CTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAG < 1:51706/64‑1 CTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAG < 1:826497/64‑1 CTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAG < 1:1099902/64‑1 CTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAG < 1:2804657/64‑1 TAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAG < 1:1839494/63‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:2106601/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:1112967/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:1256532/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:891011/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:13986/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:1474312/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:1538622/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:1702522/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:185240/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:2063255/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:2097610/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:616155/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:61113/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:2856638/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:589158/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:2155306/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:2168009/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:2289005/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:259079/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:2629398/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:401678/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:2820544/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:3042809/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:2836943/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:3021132/65‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:2854450/65‑1 AGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:1367239/64‑1 AAAAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/576063‑576000‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaaGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT > W3110S.gb/654213‑654275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |