| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 576000 = | 0 (0.000) | 42 (1.140) | 4/114 | 0.2 | 100% | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin |
| ? | W3110S.gb | 654213 = | NA (NA) | coding (70/477 nt) | dcuC | anaerobic C4‑dicarboxylate transport | |||||
CGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTT > W3110S.gb/575937‑576063 | accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1702522‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2289005‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:259079‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2168009‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2155306‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2106601‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2097610‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2063255‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2629398‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2820544‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:185240‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2836943‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2854450‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2856638‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:3021132‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:891011‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:3042809‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1474312‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:13986‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:401678‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1112967‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1538622‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:589158‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:61113‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1256532‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:616155‑M1/2‑1 (MQ=255)accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1367239‑M1/1‑1 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:1839494‑M1/3‑1 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:2804657‑M1/4‑1 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:826497‑M1/4‑1 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:51706‑M1/4‑1 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:1099902‑M1/4‑1 (MQ=255) ctgttctatggatccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:2844487‑M1/4‑1 (MQ=255) ctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGa < 1:480426‑M1/10‑1 (MQ=255) gatgacaaacatgatctcatatcagggacttgttctcaccttccTTAGTACTGATGCAGCTAcag > 1:1393597‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:2364794‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:609848‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:57070‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:533332‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:1367969‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:643082‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:689322‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:1637731‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:3002817‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:2994341‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:817342‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:2884945‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:1119251‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:1957368‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:887161‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:2400065‑M1/45‑65 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:240507‑M1/45‑65 (MQ=255) tcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:2377951‑M1/29‑49 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCAt < 1:1901930‑M1/49‑1 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc < 1:629856‑M1/50‑1 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc < 1:1329152‑M1/50‑1 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc < 1:566948‑M1/50‑1 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc < 1:2336125‑M1/50‑1 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc < 1:239516‑M1/50‑1 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc < 1:369368‑M1/50‑1 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc < 1:1778727‑M1/50‑1 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc < 1:2044162‑M1/50‑1 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc < 1:7121‑M1/50‑1 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc < 1:1795696‑M1/50‑1 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc < 1:823720‑M1/50‑1 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACAGTTAATTTTTTCATc < 1:925322‑M1/50‑1 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttt > 1:1156134‑M1/4‑65 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttt > 1:990707‑M1/4‑65 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttt > 1:1366532‑M1/4‑65 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttt > 1:1492742‑M1/4‑65 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttt > 1:3037056‑M1/4‑65 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttt > 1:293285‑M1/4‑65 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttt > 1:1757498‑M1/4‑65 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttt > 1:2822780‑M1/4‑65 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttt > 1:2389430‑M1/4‑65 (MQ=255) TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttttt < 1:328510‑M1/64‑1 (MQ=255) TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttttt < 1:2936116‑M1/64‑1 (MQ=255) TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttttt < 1:2723254‑M1/64‑1 (MQ=255) TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttttt < 1:888307‑M1/64‑1 (MQ=255) TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttttt < 1:105012‑M1/64‑1 (MQ=255) TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttttt < 1:2211891‑M1/64‑1 (MQ=255) | CGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTT > W3110S.gb/575937‑576063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |