| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 52 (0.820) | 27/128 | 0.3 | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
ACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2173508‑2173565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGGT < W3110S.gb/3932933‑3932865 agAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTG > 1:3235914/3‑71 TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATT > 1:2748998/1‑71 AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTC < 1:942706/71‑1 CCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAAC > 1:2695831/1‑70 CTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCA < 1:958982/71‑1 CTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCA < 1:3342180/71‑1 AGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGGGGTGCCGATTTTAAATTCAACCAGACGGT < 1:1321496/70‑1 GCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTA > 1:4643752/1‑70 TGTGTCCATATTACGTGGGTAGGATCACACTTCGGT < 1:3110375/36‑1 TGTGTCCATATTACGTGGGTAGGATCACACTTCGGT < 1:4618657/36‑1 TGTGTCCATATTACGTGGGTAGGATCACACTTCGGT < 1:3728561/36‑1 TGTGTCCATATTACGTGGGTAGGATCACACTTCGGT < 1:3499175/36‑1 GTGTCCATATTACGTGGGTAGGATCACACTTCGGT < 1:1838003/35‑1 TGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAA < 1:4516093/48‑1 TGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAA < 1:3004770/48‑1 GTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCG > 1:1667190/1‑71 CATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGA > 1:4094530/1‑71 CATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAA > 1:349485/1‑50 TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGG < 1:2114502/67‑1 TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGG < 1:2280950/67‑1 TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCA < 1:4024431/47‑1 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGA < 1:1736224/71‑1 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG > 1:2360143/1‑70 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG < 1:1514825/70‑1 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG < 1:2718294/70‑1 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG > 1:3422973/1‑70 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGG < 1:4122394/65‑1 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCA < 1:2055541/49‑1 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCA < 1:3219221/49‑1 ACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCTGACGGTTATAAAGCGGGACGGAA < 1:369/70‑1 ACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG > 1:4131160/1‑68 CGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGA < 1:1535665/71‑1 CGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGA < 1:1606444/71‑1 GTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAG < 1:2385280/71‑1 TGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGG < 1:489744/71‑1 GGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCG < 1:1311692/71‑1 GGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCG > 1:236956/1‑71 TAGGATCACACTTCGGTTGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG < 1:2728682/61‑1 GGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCAT < 1:1615717/71‑1 GATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAA < 1:1664265/60‑1 ATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGCGGCGTCATAG > 1:2360442/1‑71 ATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAG < 1:3466117/71‑1 ATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAG > 1:1241002/1‑71 ATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGG > 1:1715456/1‑52 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGG > 1:3839085/1‑71 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGG > 1:432778/1‑71 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATA > 1:39878/1‑69 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATA > 1:1754315/1‑69 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATA > 1:729659/1‑69 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAG > 1:2971665/1‑59 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAA > 1:606129/1‑58 ACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGGT < 1:384535/70‑1 ACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2173508‑2173565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGGT < W3110S.gb/3932933‑3932865 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |