| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 52 (0.820) | 27/128 | 0.3 | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
Only 100 of 116 total aligned reads displayed.
CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTA > W3110S.gb/3932864‑3933000 | caccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTg < 1:4117567/70‑1 (MQ=255) ccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:3839085‑M2/1‑68 (MQ=255) ccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:432778‑M2/1‑68 (MQ=255) tgagtcacctctgactgagagtttactcacttagacgcgtgtccactattgctgggtaagatcAGTGATcc > 1:3832404‑M2/64‑71 (MQ=255) cTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgat < 1:3466117‑M2/71‑5 (MQ=255) cTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgat > 1:1241002‑M2/1‑67 (MQ=255) cTATGACGCCGCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgat > 1:2360442‑M2/1‑67 (MQ=255) tATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:39878‑M2/1‑66 (MQ=255) tATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:729659‑M2/1‑66 (MQ=255) tATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:1754315‑M2/1‑66 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGc > 1:4616283‑M2/59‑71 (MQ=255) cGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacc < 1:1311692‑M2/71‑11 (MQ=255) cGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacc > 1:236956‑M2/1‑61 (MQ=255) ccTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctaccca < 1:489744‑M2/71‑13 (MQ=255) tctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCg > 1:1307573‑M2/55‑71 (MQ=255) ctctTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccac < 1:2385280‑M2/71‑14 (MQ=255) tctTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacg < 1:1535665‑M2/71‑15 (MQ=255) tctTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacg < 1:1606444‑M2/71‑15 (MQ=255) ctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATc > 1:1029177‑M2/54‑60 (MQ=255) ctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc > 1:3141720‑M2/54‑71 (MQ=255) ctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc > 1:1110896‑M2/54‑71 (MQ=255) ctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc > 1:194114‑M2/54‑71 (MQ=255) ctTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:2971665‑M2/1‑56 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:1664265‑M2/60‑6 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:606129‑M2/1‑55 (MQ=255) ttCCGTCCCGCTTTATAACCGTCAGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:369‑M2/70‑16 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTg > 1:855651‑M2/51‑70 (MQ=255) ctgagagtttactcacttagccgcgtgtccactattgctgggtaaaatcAGTGATCCCGGGCCTCGCTGaa < 1:4466176‑M2/22‑1 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:1514825‑M2/70‑18 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:2360143‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:2718294‑M2/70‑18 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt > 1:4131160‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACAACCGAAGTGtgatccta < 1:2728682‑M2/61‑9 (MQ=255) tCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:4094530‑M2/1‑50 (MQ=255) gagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGt > 1:781457‑M2/46‑71 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:2114502‑M2/67‑20 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:2280950‑M2/67‑20 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:4122394‑M2/65‑18 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgat > 1:1715456‑M2/1‑48 (MQ=255) agtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg < 1:1916811‑M2/27‑1 (MQ=255) cGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggac > 1:1667190‑M2/1‑47 (MQ=255) tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:1397029‑M2/41‑69 (MQ=255) tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:1923794‑M2/41‑69 (MQ=255) taACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggc > 1:4643752‑M2/1‑40 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:2673097‑M2/33‑70 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:3510757‑M2/33‑70 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:1838743‑M2/33‑70 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:1370263‑M2/33‑70 (MQ=255) tagccgcgtgtccactattctgggtaagatcAGTGATCTCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:4192659‑M2/32‑69 (MQ=255) gccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:2911242‑M2/40‑1 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgag < 1:3342180‑M2/71‑40 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgag < 1:958982‑M2/71‑40 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:3219221‑M2/49‑18 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:2055541‑M2/49‑18 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgagg > 1:2695831‑M2/1‑30 (MQ=255) ttGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:349485‑M2/1‑29 (MQ=255) tGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:4024431‑M2/47‑20 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttct < 1:942706‑M2/71‑45 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:487096‑M2/49‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:2929072‑M2/49‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:3278764‑M2/49‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:492609‑M2/49‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa > 1:2399250‑M2/23‑70 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa > 1:861536‑M2/23‑70 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa < 1:1936028‑M2/48‑1 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa > 1:186961‑M2/21‑62 (MQ=255) ttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca < 1:3004770‑M2/48‑26 (MQ=255) ttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca < 1:4516093‑M2/48‑26 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:3548117‑M2/52‑1 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:4091116‑M2/52‑1 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:720654‑M2/52‑1 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:343038‑M2/52‑1 (MQ=255) actattgctgggtaagatcAGTGATCCCAGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:2935261‑M2/52‑1 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:3986077‑M2/49‑1 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:3986876‑M2/17‑70 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:911104‑M2/17‑70 (MQ=255) attgctgggtaagataAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:1720402‑M2/17‑70 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg > 1:3007199‑M2/16‑51 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata < 1:170049‑M2/56‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata < 1:1896645‑M2/56‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtat < 1:3521466‑M2/55‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtat < 1:368852‑M2/55‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta < 1:548567‑M2/54‑1 (MQ=255) aaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttca > 1:2748998‑M2/1‑19 (MQ=255) tgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata < 1:969968‑M2/56‑1 (MQ=255) gctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATAcc > 1:1658052‑M2/14‑71 (MQ=255) tgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCtt > 1:3349607‑M2/12‑71 (MQ=255) tgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCtt > 1:1411399‑M2/12‑71 (MQ=255) caccacCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattct > 1:3235914‑M2/1‑13 (MQ=255) gtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa < 1:258666‑M2/63‑1 (MQ=255) gtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa < 1:3361065‑M2/63‑1 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAt > 1:1111029‑M2/8‑71 (MQ=255) accGAAGTGtgatcctacccacgtaatatggacaca < 1:4618657‑M2/36‑28 (MQ=255) accGAAGTGtgatcctacccacgtaatatggacaca < 1:3499175‑M2/36‑28 (MQ=255) accGAAGTGtgatcctacccacgtaatatggacaca < 1:3728561‑M2/36‑28 (MQ=255) accGAAGTGtgatcctacccacgtaatatggacac < 1:1838003‑M2/35‑27 (MQ=255) gatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:2360994‑M2/52‑1 (MQ=255) gatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:1863354‑M2/52‑1 (MQ=255) atcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:1311789‑M2/52‑1 (MQ=255) AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTa < 1:599948‑M2/71‑1 (MQ=255) | CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTA > W3110S.gb/3932864‑3933000 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |