Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1964893	1964903	11	34 [0]	[0] 30	flhA	predicted flagellar export pore protein

GGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGC  >  W3110S.gb/1964828‑1964892                                                                 | ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:186312/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:79368/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:783214/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:69808/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:354215/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:261584/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:249267/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:2481323/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:2480921/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:837592/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:2257162/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:2199018/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:2142146/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:2134273/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:1013669/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:1068349/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:1760878/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:1712940/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:1620597/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:1613356/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:1482475/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:1438874/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:1787472/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:1412685/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:1388673/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:1356140/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:1279087/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:1271162/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:1207970/65‑1 (MQ=255) ggcggcGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:1078980/65‑1 (MQ=255) ggcggaGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:2478980/65‑1 (MQ=255)  gcggcgCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:982741/64‑1 (MQ=255)                           ggATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:2069471/39‑1 (MQ=255)                             aTAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGc  <  1:2366455/37‑1 (MQ=255)                                                                 | GGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGC  >  W3110S.gb/1964828‑1964892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑