Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1965591	1965609	19	27 [0]	[0] 26	flhA	predicted flagellar export pore protein

AGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCT  >  W3110S.gb/1965527‑1965590                                                                | aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:2413028/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:941905/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:648744/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:613980/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:570444/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:550350/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:548868/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:393108/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:370802/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:25904/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:2522517/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:248487/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:2481182/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:1260997/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:2145816/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:207608/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:2032891/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:1875972/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:1875162/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:1870842/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:179604/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:164056/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:1433684/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:1340603/64‑1 (MQ=255) aGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:1335894/64‑1 (MQ=255)                      tgCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:1858418/43‑1 (MQ=255)                         accacTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCt  <  1:869518/40‑1 (MQ=255)                                                                | AGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCCATCTCCTGGGCAAATTTCT  >  W3110S.gb/1965527‑1965590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑