Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2003208	2003345	138	18 [0]	[0] 31	fliA	RNA polymerase, sigma 28 (sigma F) factor

AAGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGT  >  W3110S.gb/2003163‑2003207                                             | aaGAACTCCTGGTAGTCAAAGTTAAAGTGCGGGATTTACTGACGt  <  1:422226/45‑1 (MQ=255) aaGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGt  <  1:2408097/45‑1 (MQ=255) aaGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGt  <  1:765890/45‑1 (MQ=255) aaGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGt  <  1:720218/45‑1 (MQ=255) aaGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGt  <  1:655440/45‑1 (MQ=255) aaGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGt  <  1:477386/45‑1 (MQ=255) aaGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGt  <  1:297064/45‑1 (MQ=255) aaGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGt  <  1:2436184/45‑1 (MQ=255) aaGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGt  <  1:1062611/45‑1 (MQ=255) aaGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGt  <  1:2250575/45‑1 (MQ=255) aaGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGt  <  1:2225050/45‑1 (MQ=255) aaGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGt  <  1:2020755/45‑1 (MQ=255) aaGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGt  <  1:1483064/45‑1 (MQ=255) aaGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGt  <  1:1412188/45‑1 (MQ=255) aaGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGt  <  1:1153963/45‑1 (MQ=255) aaGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGt  <  1:1133945/45‑1 (MQ=255) aaGAACTCCTGGTAGTCAAAGTTAAACTGCGGCATTTACTGACGt  <  1:2242741/45‑1 (MQ=255)         cTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGt  <  1:704358/37‑1 (MQ=255)                                             | AAGAACTCCTGGTAGTCAAAGTTAAAGTGCGGCATTTACTGACGT  >  W3110S.gb/2003163‑2003207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑