Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2075640	2075661	22	31 [0]	[0] 30	flu	antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

GCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAG  >  W3110S.gb/2075575‑2075639                                                                 | gCAACCGGAAAAACCATCCTGAACCTGGTGACCGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:514801/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:2058329/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:952936/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:937265/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:76269/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:712044/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:569481/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:447892/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:39586/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:32720/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:2385102/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:2272240/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:2119872/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:2077200/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:1106998/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:1905217/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:1871291/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:1601836/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:1546499/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:1417126/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:1413851/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:1300684/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:1265/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:1234893/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:1217195/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:1215431/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:1210691/65‑1 (MQ=255) gCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:1145471/65‑1 (MQ=255)  cAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:377286/64‑1 (MQ=255)  cAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:776420/64‑1 (MQ=255)              ccATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAg  <  1:143399/52‑1 (MQ=255)                                                                 | GCAACCGGAAAAACCATCCTGAACCTGGTGAACGCCGGCAACAGTGCGTCGGGGCTGGCGACCAG  >  W3110S.gb/2075575‑2075639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑