Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2075640	2075661	22	31 [0]	[0] 30	flu	antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

GAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCGG  >  W3110S.gb/2075662‑2075726 |                                                                 gAAGGCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:2322488/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTcc                        >  1:1508888/1‑43 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:2092207/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:956466/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:900775/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:834119/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:830558/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:805874/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:465002/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:359806/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:271964/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:2310327/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:2268708/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:2253813/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:1141512/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:1870917/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:1815525/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:1769606/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:1765223/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:1732861/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:1724599/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:1533993/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:1530203/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:1450497/1‑65 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCg   >  1:250808/1‑64 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCg   >  1:1633605/1‑64 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCg   >  1:794960/1‑64 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCg   >  1:1475233/1‑64 (MQ=255) gAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCg   >  1:1430151/1‑64 (MQ=255) gAAGCCATTAACGGTGCCACAACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCgg  >  1:1230950/1‑65 (MQ=255) |                                                                 GAAGCCATTAACGGTGCCACCACGGAGGAAGGGGCCTTTGTCCAGGGGAACAGGCTGCAGGCCGG  >  W3110S.gb/2075662‑2075726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑