Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2781412	2781433	22	79 [0]	[0] 59	ypjA/pinH	adhesin‑like autotransporter/ECK2645:JW5423:b2648; predicted invertase fragment

AGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTG  >  W3110S.gb/2781349‑2781411                                                               | aGCGGCGAGAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:754831/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:292437/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:396361/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:377757/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:352775/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:352543/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:326434/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:324843/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:320469/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:317020/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:478182/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:261575/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:228412/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:228027/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1865848/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1842880/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1833388/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1819402/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1810432/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1780465/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:774018/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:984583/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:969/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:952410/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:930475/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:923914/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:903525/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:871615/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:867658/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:856153/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:429002/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:743510/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:659022/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:614894/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:600443/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:597052/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:552054/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:48878/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1775042/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1280133/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1016738/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1407273/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1390171/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1384862/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1375593/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1358501/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1338551/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1293384/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1284064/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1410835/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1230219/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1221919/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1165291/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1159124/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1136189/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1074710/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1066156/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1052841/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1040143/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1657463/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:175937/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1754271/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1742895/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1718741/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1714228/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1690314/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1680245/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1668118/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1663683/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1507534/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1597085/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1591035/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1558942/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1538643/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:152488/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1515044/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:1514198/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATATCATCCTCTGAAAAGTGAATACTg  >  1:1657239/1‑63 (MQ=255) aGCGGCGACAATAATAGGGACTGGACCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTg  >  1:521053/1‑63 (MQ=255)                                                               | AGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTG  >  W3110S.gb/2781349‑2781411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑