Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2781412	2781433	22	79 [0]	[0] 59	ypjA/pinH	adhesin‑like autotransporter/ECK2645:JW5423:b2648; predicted invertase fragment

CTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCA  >  W3110S.gb/2781434‑2781495 |                                                              cTTTGCTGGAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1015602/62‑1 (MQ=255) cTTTGCTGCAACATCATCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:55316/62‑1 (MQ=255) cTTTGCTGCAACATCAGCCCACAGGCAGCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1726553/62‑1 (MQ=255) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTTAAGAGACAGCGCa  <  1:195757/62‑1 (MQ=255) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:564595/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1854444/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:216685/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:276272/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:291578/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:389829/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:389990/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:415168/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:44501/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:467358/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:493948/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:498145/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1817607/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:583977/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:632644/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:694428/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:698646/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:716588/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:723112/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:739646/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:78497/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:790027/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:850282/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:852000/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:86492/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:915920/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:938289/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1376163/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1026815/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1031348/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1083632/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1114990/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:115409/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1157488/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1167519/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1189447/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1234675/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1251857/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1286186/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1288097/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1296871/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1822567/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1385414/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1389336/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1486316/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1535444/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1614126/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1617264/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1620548/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1620908/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1622167/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1654607/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1656107/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:167173/62‑1 (MQ=40) cTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa  <  1:1754877/62‑1 (MQ=40) |                                                              CTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCA  >  W3110S.gb/2781434‑2781495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑