Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2789429	2789903	475	46 [0]	[0] 34	ygaF	hypothetical protein

CCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGT  >  W3110S.gb/2789364‑2789428                                                                 | cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:511220/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:182087/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:202389/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:279888/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:298989/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:341941/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:375579/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:399104/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:440965/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:455520/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:507726/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:508360/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1762715/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:579908/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:63234/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:805994/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:84241/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:851648/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:855042/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:879839/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:916645/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:947177/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:971882/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1543818/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:108565/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1111248/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1178697/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1278925/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1382214/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1407539/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1413388/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1424927/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1449048/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1451846/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1494223/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1066699/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1572597/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1606516/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1628079/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1673397/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1696931/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1700786/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1712647/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1727983/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1749007/1‑65 (MQ=255) cccATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGt  >  1:1761346/1‑65 (MQ=255)                                                                 | CCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGT  >  W3110S.gb/2789364‑2789428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑