Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3416414	3416515	102	100 [0]	[0] 124	acrF	multidrug efflux system protein

CTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAGGG  >  W3110S.gb/3416349‑3416413                                                                 | cTTACCCCTGCGTTATGTGCACCGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1408109/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTACACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:657283/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGGAAATAAggg  >  1:2732/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:355035/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:537774/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:530871/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:529296/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:521155/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:513650/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:498390/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:470161/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:462995/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:440540/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:399780/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:599891/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:351584/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:317635/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:300727/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:282301/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:229615/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:197289/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1851757/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1842649/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1813651/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1809134/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1803421/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:738818/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:97750/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:975056/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:933134/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:91545/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:914571/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:910474/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:874077/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:862651/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:862016/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:834165/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:779683/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:740352/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:546655/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:726172/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:723787/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:718262/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:692466/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:664704/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:644800/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:632729/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:615609/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:607555/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:604946/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1007188/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1212114/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1396575/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1394685/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1381143/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1362586/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1344967/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1339523/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1337167/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1252841/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1238313/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1225050/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1221198/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1217301/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1405796/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1194769/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1191924/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1180828/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1168156/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1144826/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1133845/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1109358/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1064088/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1046796/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1011325/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1003210/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:152437/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1776865/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1762485/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:17621/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1747844/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1696832/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:163765/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1620640/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1604372/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1604103/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1586843/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1548342/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1516391/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1511895/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1496174/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1491964/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1457870/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:144915/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1437990/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1417946/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1415157/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:141283/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAggg  >  1:1407445/1‑65 (MQ=255) cTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCAACACGAAAATAAggg  >  1:1778796/1‑65 (MQ=255)                                                                 | CTTACCCCTGCGTTATGTGCAACGCTGCTTAAACCCGTCTCTGCTGAGCATCACGAAAATAAGGG  >  W3110S.gb/3416349‑3416413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑