Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	564868	565032	165	41 [0]	[0] 186	intD	predicted integrase

ACCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGT  >  W3110S.gb/564812‑564867                                                        | aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:831924/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:284419/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:297615/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:333239/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:373028/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:40667/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:496359/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:564869/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:672672/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:710315/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:777474/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:250121/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:839429/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:842160/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:853684/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:857681/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:863033/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:911966/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:92553/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:931145/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:986667/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:1389028/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:101396/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:112966/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:1136517/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:1173796/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:1178989/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:1180032/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:1228014/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:1276037/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:1292139/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:101373/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:1418496/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:1587365/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:1625557/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:1639426/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:1763149/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:1849047/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:1871288/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:217589/1‑56 (MQ=255) aCCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGt  >  1:220608/1‑56 (MQ=255)                                                        | ACCTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGT  >  W3110S.gb/564812‑564867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑