Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2006987	2007226	240	44 [0]	[0] 105	fliD	flagellar filament capping protein

AGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAA  >  W3110S.gb/2006922‑2006986                                                                 | agggTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:547157/4‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGTCTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1456389/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGTTGCGGACGATTCAGACGCAGTTGaaa  >  1:271543/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:572815/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:18613/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:248879/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:250556/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:260414/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:383145/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:473347/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:548921/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1773819/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:612125/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:681702/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:692636/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:70012/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:751675/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:877341/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:899740/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:916135/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:983879/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:98565/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:134444/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1098781/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1138283/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1145593/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1154235/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1177769/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1188036/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1189390/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1257992/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1263127/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1306303/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1045925/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1374145/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1450593/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1497802/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1650439/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1664354/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1696093/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:1696179/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGaaa  >  1:171497/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACACAGTTGaaa  >  1:345709/1‑65 (MQ=255) agagTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTACGGACGATTCAGACGCAGTTGaaa  >  1:1725826/1‑65 (MQ=255)                                                                 | AGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAA  >  W3110S.gb/2006922‑2006986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑