Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2754376	2754397	22	75 [0]	[0] 89	smpB/intA	trans‑translation protein/integrase

GCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGC  >  W3110S.gb/2754398‑2754462 |                                                                 gCCTCCGCTGTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGcc      >  1:113381/1‑61 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCa                                >  1:1662473/1‑35 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAaga                     >  1:157973/1‑46 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGccc     >  1:1715968/1‑62 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:42033/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:553758/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:527990/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:518385/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:507632/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:486002/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:48042/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:442059/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:432677/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:422937/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:58540/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:360327/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:35674/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:325133/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:324826/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:267479/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:26606/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:261/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:252488/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:201424/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:776155/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:995732/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:983850/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:94933/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:946220/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:943516/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:936287/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:933790/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:84261/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:837515/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:807500/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1818669/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:773415/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:764718/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:760301/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:731699/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:728629/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:692771/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:642180/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:634104/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:624816/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:590856/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1239774/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1868416/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1377926/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1374805/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1364735/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1355378/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1348991/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1343994/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1316760/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1302343/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1289757/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1458217/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1239282/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1223098/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1167525/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:11493/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1116310/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1093876/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1078030/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1041919/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:103391/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1491322/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1846047/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1020488/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1814490/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1763590/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1716618/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1695438/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1694/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1692163/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1686322/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1669666/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1631003/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1604535/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1512401/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1511538/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1510761/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1506399/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:1498342/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgc  >  1:147556/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcct    >  1:802671/1‑63 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCccagc  >  1:176032/1‑65 (MQ=255) gCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGAGGAAGCcctgc  >  1:1248306/1‑65 (MQ=255) |                                                                 GCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGC  >  W3110S.gb/2754398‑2754462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑