Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2810502	2810633	132	40 [0]	[0] 66	emrA	multidrug efflux system

TCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAG  >  W3110S.gb/2810634‑2810698 |                                                                 tCAGGCGATGATTCTGGGGACTAATCTGGAAGATca                               >  1:555082/1‑36 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAGGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:406639/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATcag                              >  1:608539/1‑37 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAgg              >  1:502714/1‑53 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGaa   >  1:1688298/1‑64 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGaa   >  1:759998/1‑64 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:383082/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:384313/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:37411/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:617926/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:43606/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:372548/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:452074/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:347855/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:528172/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:531045/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:335372/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:333713/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:326582/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:636952/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:667462/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:714833/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:744716/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:750141/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:768560/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:782764/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:80991/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:818458/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:842032/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:940521/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:959136/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:974932/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:986669/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:997729/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1387451/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1029672/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1062313/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1075287/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1131340/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:113937/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1182855/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1186403/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1204306/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1208774/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1234277/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1251365/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1288358/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1316780/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1329487/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1374256/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:14019/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1453414/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1469501/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1526408/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1529468/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1575519/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1582582/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1620306/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1723847/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1739494/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1740351/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1758731/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:1797402/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:209312/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAg  >  1:268904/1‑65 (MQ=255) tCAGGCGATGATTCTGGGGACTAAACAGGAAGATcag                              >  1:1008592/1‑37 (MQ=255) |                                                                 TCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAG  >  W3110S.gb/2810634‑2810698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑