Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	559258	559275	18	17 [0]	[0] 67	sfmD	predicted outer membrane export usher protein

TCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGCC  >  W3110S.gb/559276‑559339 |                                                                tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTTAAAGCTGTACCTGATGcc  >  1:755703/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGc               >  1:664076/1‑51 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:450349/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:587266/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:571936/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:552431/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:539964/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:531797/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:486808/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:31381/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:45014/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:437828/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:407878/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:375301/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:341817/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:337769/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:320615/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:25021/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:638794/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:676153/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:718988/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:762511/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:819575/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:823004/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:854946/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:883638/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:883833/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:900114/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:904574/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:920912/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:941958/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:943367/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:975438/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:996078/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1252027/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1498836/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1497454/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1454594/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1437846/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1424830/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1400720/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1296901/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1253028/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:150927/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1172034/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1126340/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:109813/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1091490/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1074011/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1014256/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1011625/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1004654/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1550930/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1599471/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:165746/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1668082/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1677434/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1697085/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1705192/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1722184/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1795972/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1845128/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1861314/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1887024/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:208975/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:21792/1‑64 (MQ=255) tCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:238652/1‑64 (MQ=255) |                                                                TCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGCC  >  W3110S.gb/559276‑559339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑