Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1827075	1827079	5	110 [0]	[0] 35	spy	envelope stress induced periplasmic protein

ATTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCG  >  W3110S.gb/1827080‑1827144 |                                                                 aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCa            >  1:1042293/1‑55 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:59170/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:1000555/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:179941/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:1868415/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:231071/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:262694/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:303903/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:463560/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:475422/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:1744120/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:790082/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:83009/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:83495/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:864671/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:87724/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:996961/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:1358892/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:1014706/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:1037585/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:1056328/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:1151731/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:1248852/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:1350179/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:1668711/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:1363529/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:1370775/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:1373230/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:141511/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:1425126/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:151428/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgcg  >  1:1593493/1‑65 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgc   >  1:196759/1‑64 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcgc   >  1:935090/1‑64 (MQ=255) aTTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTcg    >  1:992199/1‑63 (MQ=255) |                                                                 ATTGCGCGGCGTTCTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCG  >  W3110S.gb/1827080‑1827144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑