Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3669986	3670120	135	55 [0]	[0] 68	rho	transcription termination factor

AACTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCACC  >  W3110S.gb/3669917‑3669985                                                                     | aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:72503/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1045698/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:177951/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:197210/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:214618/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:216411/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:219731/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:352817/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:518895/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:525725/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:545230/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:653357/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:693383/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:722234/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1589842/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:808139/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:809962/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:817691/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:817873/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:830627/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:832716/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:844537/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:903460/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:945732/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:976215/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:981332/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:999515/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1558130/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:106050/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1082803/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:112209/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1171461/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1194479/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1230368/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1239855/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1271180/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1288080/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1289995/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1315191/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1332573/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1351360/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1368899/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1394591/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1412020/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1452838/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:145790/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1472677/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1522119/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1529819/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1550444/69‑1 (MQ=255) aaCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1575584/69‑1 (MQ=255)  aCTTTCAGCAGCGCAAAATAGCGTTCACGTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:318158/68‑1 (MQ=255)  aCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1126966/68‑1 (MQ=255)  aCTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:976836/68‑1 (MQ=255)                              cttcttTCGGCGGGCGAATCTTACCAGAGATGGTATCAcc  <  1:1060009/40‑1 (MQ=255)                                                                     | AACTTTCAGCAGCGCAAAATAGCGTTCACCTTCTTTCGGCGGGCGAATCTTACCAGAGATGGTATCACC  >  W3110S.gb/3669917‑3669985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑