Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1094185	1094411	227	54 [0]	[0] 76	ycdT	predicted diguanylate cyclase

CTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGC  >  W3110S.gb/1094412‑1094470 |                                                           cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAAt                    >  1:577001/1‑41 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAAt                    >  1:91891/1‑41 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATg                   >  1:341482/1‑42 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATg                   >  1:650506/1‑42 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTa        >  1:249798/1‑53 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTgg   >  1:696580/1‑58 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:439903/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:965255/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:62505/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:972926/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:531014/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:524632/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:475755/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:463119/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:461876/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:657356/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:438487/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:378219/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:976554/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:369412/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:360731/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:352995/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:978334/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:953950/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:674879/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:693148/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:326138/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:698094/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:725604/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:729772/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:811518/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:816706/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:82104/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:849474/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:851341/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:862367/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:890165/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:90199/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:95729/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:112212/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1316388/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:131206/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1246216/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1239094/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:123006/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1204879/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1201234/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1196217/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:117878/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1326896/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1093331/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1069496/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1036702/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1034981/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:102582/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1022293/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:101568/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1011652/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1509632/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:320314/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:307578/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:253229/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:210375/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:203290/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1591675/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1548632/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1526770/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1002844/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1501576/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1498282/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1498254/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1445475/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1439076/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:139543/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1381059/1‑59 (MQ=255) cTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGc  >  1:1340367/1‑59 (MQ=255) |                                                           CTGAACGTGCGAAAGCTTTAGCGGAAAGGATTCGGGAAAATGTTGAGCGTTTAACTGGC  >  W3110S.gb/1094412‑1094470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑