Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4080638	4081236	599	162 [0]	[0] 36	rtcR	sigma 54‑dependent transcriptional regulator of rtcBA expression

GCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGA  >  W3110S.gb/4081237‑4081290 |                                                      gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:676396/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:370313/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:39777/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:399878/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:405985/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:543666/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:571445/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:611646/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:651370/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:292215/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:685533/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:81964/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:82198/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:847630/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:903833/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:947659/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:956039/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:960185/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:1388343/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:1024701/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:1059256/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:114500/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:1211400/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:1218683/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:1362106/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:1376274/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:1385332/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:1000942/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:1492633/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:16548/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:211563/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:225866/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:25241/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:254025/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:255882/1‑54 (MQ=255) gCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGa  >  1:279219/1‑54 (MQ=255) |                                                      GCTTTCAGCAGCATTGCCTGTTCGTCTGCGCCCAGTTCGCCAATCTCATCAAGA  >  W3110S.gb/4081237‑4081290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑