New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 154878	46 (1.000)	8 (0.230) +GTTTTGGTTTC	4/74	NT	19.8%	coding (549/2598 nt)	htrE	predicted outer membrane usher protein
	?	W3110S.gb	3275776 =	38 (0.830)					coding (640/1572 nt)	garD	(D)‑galactarate dehydrogenase

CTATGATATCCGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/154864‑154878 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTTGTGAAAAGTTGC  >  W3110S.gb/3275776‑3275791                |||||||||||                 gTATGATATCCGTTGGTTTTGGTTTCGGTTGTGAA         <  1:832716/34‑1  TATGATATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTtt  >  1:4064371/1‑39  TATGATATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTT    <  1:1267724/39‑1  TATGATATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGT     <  1:3262988/38‑1   ATGATATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTtt  >  1:717061/1‑38   ATGATATCCGTTGGTTTTGGTTTCGGTTGTGAAAA       >  1:1330230/1‑35     GATATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGT     <  1:1338579/35‑1      ATATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTT    >  1:2450338/1‑35                |||||||||||                 CTATGATATCCGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/154864‑154878 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTTGTGAAAAGTTGC  >  W3110S.gb/3275776‑3275791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.