| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 154878 | 46 (1.000) | 8 (0.230) +GTTTTGGTTTC |
4/74 | NT | 19.8% | coding (549/2598 nt) | htrE | predicted outer membrane usher protein |
| ? | W3110S.gb | 3275776 = | 38 (0.830) | coding (640/1572 nt) | garD | (D)‑galactarate dehydrogenase | |||||
CCACCGTTAAATGCAGCATAAATGCTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAA > W3110S.gb/154813‑154947 | ccACCGTTAAATGCAGCATAAATGCTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGtt < 1:357689/71‑1 (MQ=255) aCCGTTAAATGCAGCATAAATGCTTTCATTTTTTCGAGCAGGGGTTTCACTATGATATCCGTTTAGGTTGt < 1:4514624/71‑1 (MQ=255) aCCGTTAAATGCAGCATAAATGCTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGt < 1:3028472/71‑1 (MQ=255) ccGTTAAATGCAGCATAAATGCTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTa > 1:2573791/1‑71 (MQ=255) ccGTTAAATGCAGCATAAATGCTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTa > 1:474354/1‑71 (MQ=255) ccGTTAAATGCAGCATAAATGCTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTCTa > 1:2163504/1‑71 (MQ=255) cGTTAAATGCAGCATAAATGCTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTAt > 1:4458332/1‑71 (MQ=255) gTTAAATGCAGCATAAATGCTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTAt > 1:4283840/1‑70 (MQ=255) aaaTGCAGCATAAATGCTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGac > 1:4095491/1‑70 (MQ=255) aaaTGCAGCATAAATGCTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGac > 1:2542932/1‑70 (MQ=255) agcaTAAATGCTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTCTATGacaaca > 1:2538476/1‑68 (MQ=255) aaTGCTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCAt > 1:1548472/1‑71 (MQ=255) aTGCTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCAtt < 1:4513108/71‑1 (MQ=255) aTGCTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCAtt < 1:1805069/71‑1 (MQ=255) cTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTaa < 1:3943087/70‑1 (MQ=255) cTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTaa < 1:3948236/70‑1 (MQ=255) cTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAAt < 1:2097271/71‑1 (MQ=255) tCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAAt < 1:4306074/68‑1 (MQ=255) tCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGc > 1:4511951/1‑70 (MQ=255) cATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAgg > 1:4525549/1‑41 (MQ=255) cATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGacaaca > 1:2414527/1‑54 (MQ=255) cATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGcc < 1:2029684/70‑1 (MQ=255) aTTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGt > 1:2534105/1‑71 (MQ=255) aTTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGt > 1:3603738/1‑71 (MQ=255) ttttttCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGacaa < 1:1697221/50‑1 (MQ=255) ttttttCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGtt < 1:3695464/71‑1 (MQ=255) ttttttCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGtt < 1:2393542/71‑1 (MQ=255) ttttCGACCAGGGGTTTCACTATGATATCCGTTGAGGt > 1:458000/1‑38 (MQ=255) ttttCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTg < 1:2637889/40‑1 (MQ=255) ttttCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTaa > 1:3041395/1‑62 (MQ=255) tCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTcc < 1:2855241/70‑1 (MQ=255) cGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGGTTTcc < 1:2300071/69‑1 (MQ=255) cAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAAc < 1:1927166/71‑1 (MQ=255) cAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAAc < 1:556332/71‑1 (MQ=255) cAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAAc < 1:2159304/71‑1 (MQ=255) cAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAAc < 1:1344121/71‑1 (MQ=255) ggggTTTCACTATGATATCCGTTGAGGTTGTATGac < 1:231010/36‑1 (MQ=255) ggggTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAACGa < 1:2712913/71‑1 (MQ=255) gggTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAACGAt > 1:2957391/1‑71 (MQ=255) ggTTTCACTATGATATCCGTTGAGGTTGTATGACAACAt > 1:530735/1‑39 (MQ=255) gTTTCACTATGATATCCGTTGAGGTTGTATGacaaca > 1:2314274/1‑37 (MQ=255) gtaTGATATCCGTTGgttttggtttcggttgtgaa < 1:832716‑M1/34‑21 (MQ=255) tATGATATCCGTTGgttttggtttcggttgtgaaaagtttt > 1:4064371‑M1/1‑14 (MQ=255) tATGATATCCGTTGgttttggtttcggttgtgaaaagtt < 1:1267724‑M1/39‑26 (MQ=255) tATGATATCCGTTGgttttggtttcggttgtgaaaagt < 1:3262988‑M1/38‑25 (MQ=255) tATGATATCCGTTGAGGTTGTATGACAACATGGCCGCAtt < 1:3442048/40‑1 (MQ=255) tATGATATCCGTTGAGGTTGTATGACAACATGGCCGCAtt < 1:2098919/40‑1 (MQ=255) aTGATATCCGTTGgttttggtttcggttgtgaaaagtttt > 1:717061‑M1/1‑13 (MQ=255) aTGATATCCGTTGgttttggtttcggttgtgaaaa > 1:1330230‑M1/1‑13 (MQ=255) aTGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGtt > 1:3337312/1‑48 (MQ=255) tGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACAt < 1:2538279/70‑1 (MQ=255) gATATCCGTTGgttttggtttcggttgtgaaaagt < 1:1338579‑M1/35‑25 (MQ=255) atatCCGTTGgttttggtttcggttgtgaaaagtt > 1:2450338‑M1/1‑10 (MQ=255) atatCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAg < 1:270756/70‑1 (MQ=255) tatCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGtt > 1:3214571/1‑71 (MQ=255) atCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGttt > 1:2109653/1‑71 (MQ=255) tCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAACGATGGAt > 1:2916493/1‑59 (MQ=255) cGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTgg > 1:4540847/1‑71 (MQ=255) cGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTg < 1:3566029/70‑1 (MQ=255) gTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTgg > 1:2024904/1‑70 (MQ=255) ttGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTgg < 1:4216182/69‑1 (MQ=255) gAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAACGa > 1:767625/1‑48 (MQ=255) gAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAACGa > 1:919775/1‑48 (MQ=255) gAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTaa < 1:135441/70‑1 (MQ=255) | CCACCGTTAAATGCAGCATAAATGCTTTCATTTTTTCGACCAGGGGTTTCACTATGATATCCGTTGAGGTTGTATGACAACATGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAA > W3110S.gb/154813‑154947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |