| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 315707 | NA (NA) | 48 (1.040) | 31/96 | NT | 100% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 576911 = | 0 (0.000) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/315639‑315707‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA > W3110S.gb/576911‑576979 CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAC > 1:829996/1‑71CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAC > 1:2574770/1‑71 CAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTG > 1:3001886/1‑71 AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTG < 1:116698/70‑1 AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACT > 1:3338562/1‑69 GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAG > 1:405639/1‑71 GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCC < 1:1835495/68‑1 TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA > 1:890244/1‑55 GAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGA > 1:52889/1‑71 AAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCT > 1:1244709/1‑71 AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTG > 1:1569523/1‑71 GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAC > 1:3052987/1‑45 ACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAA < 1:2351560/71‑1 CTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAC > 1:1244105/1‑41 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGAT > 1:1118368/1‑59 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAC > 1:2401709/1‑40 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTG > 1:2030288/1‑71 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGT > 1:3768308/1‑61 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGT > 1:1937318/1‑61 GCTTAGGCCTGTGTCCATATTACGTGGTTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGT > 1:3271649/1‑71 CTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTa < 1:3348869/71‑2 GCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTA < 1:468117/71‑1 TGTGTCCATATTACGTGGGTAGGATCAACTGGCCCA < 1:4114504/36‑1 GTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAA < 1:3791126/56‑1 GTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAA < 1:2669225/56‑1 TGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATG < 1:2889763/47‑1 TCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACG < 1:2201665/42‑1 CATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATA > 1:3608945/1‑71 ATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGA < 1:3234336/40‑1 TATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAC < 1:1437746/61‑1 TATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGA < 1:1825719/39‑1 TATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC < 1:304440/37‑1 TATTACGTAGGTAGGATCAACTGGCCCAAGTGGTAACGA < 1:2923017/39‑1 TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACA > 1:572775/1‑69 TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACA > 1:4151464/1‑69 TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAG > 1:731947/1‑55 TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAG > 1:1296524/1‑55 TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGT > 1:1055877/1‑41 TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGT > 1:663304/1‑41 TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATG > 1:1733529/1‑39 TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACG < 1:1471051/36‑1 TACGTGGGTAGGATCAACTGGCCGAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA > 1:3602439/1‑59 TACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAA < 1:4501193/70‑1 ACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAG > 1:4272993/1‑53 CGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGA < 1:3128366/70‑1 TGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATAT > 1:750759/1‑71 GGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATT < 1:598553/70‑1 GTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCT < 1:1779603/49‑1 GTAGGATCAACTGGCCCAAGTGGTAACGATGCTCTCGAAGGT > 1:2420729/1‑42 TAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTT > 1:1744092/1‑71 TAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTT < 1:1240717/71‑1 TAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGT > 1:1628144/1‑70 AGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTGCATACCATACAAAGATAT > 1:4013424/1‑66 GGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGG < 1:3496781/71‑1 GGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTG > 1:248131/1‑67 GGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAA < 1:4005908/36‑1 GGATCAACTGGCCCAAGTGCTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGG > 1:707169/1‑71 GATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATA < 1:4069603/63‑1 GATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTA < 1:971672/46‑1 ATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG < 1:3557113/71‑1 ATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG < 1:3473366/71‑1 ATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTA < 1:2560957/45‑1 ATCAACTGGCCCAAGTGGTAACGATGGTCGGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG > 1:683403/1‑71 TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG < 1:4495826/70‑1 TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATT > 1:1856744/1‑63 TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAA > 1:1108376/1‑57 TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA > 1:3151050/1‑46 TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA > 1:2117124/1‑46 CAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATAT > 1:2380642/1‑61 CAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATA > 1:2261412/1‑60 AACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA < 1:3652418/70‑1 CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/315639‑315707‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA > W3110S.gb/576911‑576979 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |