New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	1122802 =	14 (0.300)	8 (0.200) +CTCCATT	3/82	NT	27.7%	intergenic (‑270/+17)	yceP/dinI	hypothetical protein/DNA damage‑inducible protein I
	?	W3110S.gb	= 1678185	35 (0.760)					coding (1433/1533 nt)	pntA	pyridine nucleotide transhydrogenase, alpha subunit

ATATGCAGTGATTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/1122819‑1122802 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGCTTCCTTAGT  <  W3110S.gb/1678185‑1678172                   |||||||               ATATCCAGTGATTTTTTTCTCCATTTTAGCTTCCTTAG   >  1:1678815/1‑38 ATATCCAGTGATTTTTTTCTCCATTTTAGCTTCCTTAG   >  1:3742632/1‑38  TATCCAGTGATTTTTTTCTCCATTTTAGCTTCCTTAGc  <  1:535202/38‑2  TATCCAGTGATTTTTTTCTCCATTTTAGCTTCCTTAG   >  1:4429769/1‑37  TATCCAGTGATTTTTTTCTCCATTTTAGCTTCCTTA    >  1:336797/1‑36  TATCCAGTGATTTTTTTCTCCATTTTAGCTTCCTT     <  1:2216175/35‑1  TATCCAGTGATTTTTTTCTCCATTTTAGCTTCCTT     >  1:4098185/1‑35  TATCCAGTGATTTTTTTCTCCATTTTAGCTTCCTT     <  1:485887/35‑1                   |||||||               ATATGCAGTGATTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/1122819‑1122802 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGCTTCCTTAGT  <  W3110S.gb/1678185‑1678172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.