| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1122802 = | 14 (0.300) | 8 (0.200) +CTCCATT |
3/82 | NT | 27.7% | intergenic (‑270/+17) | yceP/dinI | hypothetical protein/DNA damage‑inducible protein I |
| ? | W3110S.gb | = 1678185 | 35 (0.760) | coding (1433/1533 nt) | pntA | pyridine nucleotide transhydrogenase, alpha subunit | |||||
GAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCAAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTCATCGGCGCTTTCCCACGT > W3110S.gb/1122739‑1122857 | gAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCAAAAAAAAt < 1:2457988/71‑1 (MQ=255) tAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCaaaaaa < 1:84771/62‑1 (MQ=255) aTTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCAAAAAAAATCACTGCatat > 1:1783654/1‑70 (MQ=255) tACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCAAAAAAAATCACTGCATATTATTCg < 1:3760240/70‑1 (MQ=255) cTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCAAAAAAAATCACTGCAtatta > 1:211727/1‑64 (MQ=255) tCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCAAAAAAAATCACTGCa < 1:4290686/58‑1 (MQ=255) aaaaTTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCAAAAAAAATCACTGCATATTATTCGCTGAc > 1:953273/1‑70 (MQ=255) aaaTTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCaaaaaaa < 1:943073/46‑1 (MQ=255) aTTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCAAAAAAAATCACTGCATATTATTCGCTGACAAAc > 1:1318188/1‑71 (MQ=255) agtaaAATAAAAAAGCCGGGGCGACCCGGCaaaaaaa < 1:2396407/37‑1 (MQ=255) aaaataaaaAAGCCGGGGCGACCCGGCAAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTCATCgg > 1:4634932/1‑71 (MQ=255) gctaaggaagctaaaatggagAAAAAAATCACTGGata < 1:535202‑M1/17‑1 (MQ=255) ctaaggaagctaaaatggagAAAAAAATCACTGGatat > 1:1678815‑M1/21‑38 (MQ=255) ctaaggaagctaaaatggagAAAAAAATCACTGGatat > 1:3742632‑M1/21‑38 (MQ=255) ctaaggaagctaaaatggagAAAAAAATCACTGGata > 1:4429769‑M1/21‑37 (MQ=255) taaggaagctaaaatggagAAAAAAATCACTGGata > 1:336797‑M1/20‑36 (MQ=255) aaggaagctaaaatggagAAAAAAATCACTGGata > 1:4098185‑M1/19‑35 (MQ=255) aaggaagctaaaatggagAAAAAAATCACTGGata < 1:2216175‑M1/17‑1 (MQ=255) aaggaagctaaaatggagAAAAAAATCACTGGata < 1:485887‑M1/17‑1 (MQ=255) ccGGGGCGACCCGGCAAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTCATCGGCGCTTTcc < 1:4089862/67‑1 (MQ=255) ccGGGGCGACCCGGCAAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTCATCGGCGCTTTc < 1:2769457/66‑1 (MQ=255) cGGGGCGACCCGGCAAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTCATCGGCGCTTTCCCACGt > 1:4335612/1‑71 (MQ=255) gggCGACCCGGCAAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTCATCGGCGCTTTCCCa < 1:4190329/66‑1 (MQ=255) ggCAAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTc > 1:368316/1‑42 (MQ=255) gCAAAAAAAATCACTGCATATTATTCGCTGACaaa > 1:2434323/1‑35 (MQ=255) gCAAAAAAAATCACTGCATATTATTCGCTGACAAACCa > 1:3318882/1‑38 (MQ=255) | GAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCAAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTCATCGGCGCTTTCCCACGT > W3110S.gb/1122739‑1122857 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |