| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1209367 = | 21 (0.460) | 15 (0.490) | 11/64 | NT | 55.6% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 10 (0.330) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
CAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/1209450‑1209367‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATG > W3110S.gb/1211196‑1211264 CAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTC > 1:4101927/1‑69 AATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTT < 1:3450071/71‑1 AATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTT < 1:3560406/71‑1 ATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTC < 1:2504369/71‑1 ACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCA < 1:1725517/70‑1 ACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCA > 1:44515/1‑70 ATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAAC > 1:1954823/1‑71 TAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACG < 1:692197/71‑1 TAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAAC < 1:524316/70‑1 GCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTa > 1:37195/1‑70 TATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTA > 1:2804242/1‑71 TGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATG < 1:3896992/71‑1 TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCA < 1:2941526/71‑1 TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGC < 1:543486/70‑1 AGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCA > 1:3713724/1‑70 AGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAA > 1:493874/1‑37 GTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGG < 1:2375201/71‑1 GCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAT > 1:1584985/1‑71 GCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAT > 1:2889421/1‑71 TGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCA < 1:152266/61‑1 CATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAT > 1:4543833/1‑70 GAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGA > 1:3053053/1‑41 TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTT > 1:913944/1‑71 TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGA < 1:3280359/38‑1 TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGA < 1:1387810/38‑1 TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGA < 1:1534543/38‑1 TTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTT > 1:4398168/1‑70 TTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTT > 1:2556419/1‑70 CTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACC < 1:4321421/71‑1 CCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAG > 1:203720/1‑71 CTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA < 1:4049057/69‑1 TTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCA < 1:1934690/43‑1 CTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGG > 1:3172773/1‑70 CTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGG > 1:330471/1‑70 CTCCCAAACCAACGTTTATGAAAATGAAGAAATAAC > 1:2043295/1‑36 TCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGA > 1:724531/1‑71 TCCCAAACCAACGTTTATGAAAATGAAGAAATAAC < 1:651073/35‑1 TCCCAAACCAACGTTTATGAAAATGAAGAAATAAC < 1:3552596/35‑1 CCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATT > 1:4076467/1‑71 CCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGA < 1:4012365/69‑1 CAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTT < 1:56360/71‑1 CAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTT < 1:1521757/71‑1 CAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTT < 1:3481041/71‑1 CAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATT > 1:709443/1‑70 CAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA > 1:1587955/1‑47 CAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAT < 1:645027/45‑1 CAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAT < 1:586483/45‑1 CAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAA > 1:3566997/1‑39 AAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTA < 1:1326510/71‑1 AAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTT > 1:4205784/1‑70 AAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACC < 1:2178231/60‑1 AAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACC < 1:586183/60‑1 AAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATC > 1:3959583/1‑45 AAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAA > 1:4578207/1‑38 AAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAA > 1:642424/1‑38 AAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAA > 1:4618434/1‑38 AAACCAACGTTTATGAAAATGAAGAAATAACAACCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTT > 1:274679/1‑70 AACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAA < 1:4504081/71‑1 AACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTG < 1:1978384/51‑1 AACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTG < 1:388363/51‑1 AACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGG < 1:3981382/40‑1 ACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATC < 1:3077624/43‑1 CCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCATGGGGATTTAACA < 1:3024809/71‑1 CCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACA < 1:219981/71‑1 CCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACA > 1:2432282/1‑71 CCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACA < 1:443223/71‑1 CCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCA > 1:459353/1‑40 AACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATG < 1:1628244/71‑1 AACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATG < 1:3637669/71‑1 CAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/1209450‑1209367‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATG > W3110S.gb/1211196‑1211264 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |