| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1209367 = | 21 (0.460) | 15 (0.490) | 11/64 | NT | 55.6% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 10 (0.330) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
Only 100 of 108 total aligned reads displayed.
TGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTAT > W3110S.gb/1209298‑1209436 | catgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgtt < 1:1628244‑M1/2‑1 (MQ=255)catgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgtt < 1:3637669‑M1/2‑1 (MQ=255) tgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTgg < 1:219981‑M1/4‑1 (MQ=255) tgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTgg > 1:2432282‑M1/68‑71 (MQ=255) tgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTgg < 1:443223‑M1/4‑1 (MQ=255) tgttaaatccccatggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTgg < 1:3024809‑M1/4‑1 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:4504081‑M1/6‑1 (MQ=255) aaGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTT > 1:283985‑M1/1‑71 (MQ=255) taaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGttt < 1:1326510‑M1/7‑1 (MQ=255) aaatccccctggtaaaagcaggaatgatgccatttggttgttatttcttcattttcataaacgTTGGttt > 1:274679‑M1/64‑70 (MQ=255) aaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGttt > 1:4205784‑M1/64‑70 (MQ=255) aaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg < 1:56360‑M1/8‑1 (MQ=255) aaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg < 1:1521757‑M1/8‑1 (MQ=255) aaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg < 1:3481041‑M1/8‑1 (MQ=255) aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg > 1:4076467‑M1/63‑71 (MQ=255) aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg > 1:709443‑M1/63‑70 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg < 1:4012365‑M1/9‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGga > 1:724531‑M1/61‑71 (MQ=255) cccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 1:3172773‑M1/59‑70 (MQ=255) ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg > 1:203720‑M1/56‑71 (MQ=255) tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAg < 1:4049057‑M1/15‑1 (MQ=255) ggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGttt < 1:2178231‑M1/7‑1 (MQ=255) ggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg < 1:4321421‑M1/18‑1 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa > 1:4398168‑M1/50‑70 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa > 1:2556419‑M1/50‑70 (MQ=255) tGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc > 1:3993426/1‑71 (MQ=255) caggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:1978384‑M1/6‑1 (MQ=255) caggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:388363‑M1/6‑1 (MQ=255) gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa < 1:3242079/71‑1 (MQ=255) atatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt > 1:3184098/1‑71 (MQ=255) atgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATg > 1:4543833‑M1/41‑70 (MQ=255) ttaaatcGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG > 1:680312‑M1/3‑48 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgt < 1:159578‑M1/70‑16 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgt < 1:4033174‑M1/70‑16 (MQ=255) gatgccatttgcttgttatttcttcattttcataaacgTTGGttt > 1:3959583‑M1/39‑45 (MQ=255) gatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:3077624‑M1/5‑1 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTg < 1:645027‑M1/8‑1 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTg < 1:586483‑M1/8‑1 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:1584985‑M1/38‑71 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg < 1:3198830‑M1/70‑18 (MQ=255) tgccatttgcttgttatttcttcattttcataaacgTTgg > 1:459353‑M1/37‑40 (MQ=255) aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttgg < 1:4104009‑M1/70‑19 (MQ=255) tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTc < 1:139922/60‑1 (MQ=255) tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa > 1:1359763/1‑62 (MQ=255) tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT < 1:778970‑M1/39‑1 (MQ=255) ccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:3981382‑M1/6‑1 (MQ=255) ccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAc < 1:2375201‑M1/37‑1 (MQ=255) cGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT < 1:3726234‑M1/38‑1 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGttt > 1:4618434‑M1/32‑38 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGttt > 1:642424‑M1/32‑38 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGttt > 1:4578207‑M1/32‑38 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGTTTg > 1:3566997‑M1/32‑39 (MQ=255) gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtccc < 1:583534‑M1/71‑25 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGaa < 1:1934690‑M1/14‑1 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgca < 1:152266‑M1/32‑1 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt > 1:3713724‑M1/30‑70 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa < 1:2941526‑M1/42‑1 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc < 1:2363379/63‑1 (MQ=255) gcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa < 1:543486‑M1/42‑1 (MQ=255) gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:285660/1‑71 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttc < 1:3762820‑M1/71‑30 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt < 1:2990241/71‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt > 1:1509832/1‑70 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGgag > 1:2043295‑M1/25‑36 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGga < 1:651073‑M1/11‑1 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGga < 1:3552596‑M1/11‑1 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG < 1:3831123‑M1/40‑1 (MQ=255) gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:767377/1‑70 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt < 1:3775653/50‑1 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTc < 1:1833363/46‑1 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcc < 1:2743458‑M1/71‑37 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttgg > 1:893173‑M1/1‑35 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat > 1:3877613‑M1/1‑35 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa > 1:4329102/1‑69 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACg > 1:2285870/1‑71 (MQ=255) aCGGCTATCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc > 1:264/1‑71 (MQ=255) tcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa < 1:1387810‑M1/23‑1 (MQ=255) tcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa < 1:3280359‑M1/23‑1 (MQ=255) tcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa < 1:1534543‑M1/23‑1 (MQ=255) tcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:3053053‑M1/16‑41 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttca < 1:645906‑M1/71‑41 (MQ=255) cgCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgca > 1:3280665/2‑46 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagc < 1:2700680‑M1/71‑43 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTc < 1:1335421/35‑1 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTc < 1:3023388/35‑1 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcc > 1:1517095‑M1/1‑23 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccac < 1:3775703‑M1/68‑46 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa > 1:2778458/1‑43 (MQ=255) taaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa > 1:2804242‑M1/7‑71 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa > 1:2197701/1‑69 (MQ=255) tacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc > 1:37195‑M1/5‑71 (MQ=255) aaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcc < 1:3970797‑M1/71‑52 (MQ=255) aaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGAAACGGCTACATTAGGACGCACCGGTTTCATAGc > 1:4601547/1‑71 (MQ=255) aCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcca < 1:1184727‑M1/71‑53 (MQ=255) aCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc > 1:4505327‑M1/1‑19 (MQ=255) aCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagcca > 1:2886230‑M1/1‑19 (MQ=255) aCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagcca > 1:1256494‑M1/1‑19 (MQ=255) cgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCta < 1:692197‑M1/69‑1 (MQ=255) gTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtat > 1:1954823‑M1/2‑71 (MQ=255) gTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCta < 1:524316‑M1/69‑1 (MQ=255) | TGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTAT > W3110S.gb/1209298‑1209436 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |