New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | W3110S.gb | 1686539 = | 44 (0.960) | 6 (0.150) +CAACG |
3/86 | NT | 13.0% | coding (567/930 nt) | tus | inhibitor of replication at Ter, DNA‑binding protein |
? | W3110S.gb | 3346688 = | 46 (1.000) | coding (256/492 nt) | ptsN | sugar‑specific enzyme IIA component of PTS |
TTTCAGGCTTTTTTCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/1686557‑1686539 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTTTCGTTCAGCT > W3110S.gb/3346688‑3346701 ||||| TTTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAGCT < 1:4547195/38‑1 TTTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAGC > 1:2475887/1‑37 TTTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAG > 1:217409/1‑36 TTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAGC > 1:4048000/1‑36 TTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAG > 1:2229201/1‑35 TTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAG > 1:3202021/1‑35 ||||| TTTCAGGCTTTTTTCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/1686557‑1686539 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTTTCGTTCAGCT > W3110S.gb/3346688‑3346701 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |