New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb 1686539 =44 (0.960)6 (0.150)
+CAACG
3/86 NT 13.0% coding (567/930 nt) tus inhibitor of replication at Ter, DNA‑binding protein
?W3110S.gb 3346688 = 46 (1.000)coding (256/492 nt) ptsN sugar‑specific enzyme IIA component of PTS

TTTCAGGCTTTTTTCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/1686557‑1686539
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTTTCGTTCAGCT  >  W3110S.gb/3346688‑3346701
                   |||||              
TTTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAGCT  <  1:4547195/38‑1
TTTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAGC   >  1:2475887/1‑37
TTTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAG    >  1:217409/1‑36
 TTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAGC   >  1:4048000/1‑36
 TTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAG    >  1:2229201/1‑35
 TTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAG    >  1:3202021/1‑35
                   |||||              
TTTCAGGCTTTTTTCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/1686557‑1686539
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTTTCGTTCAGCT  >  W3110S.gb/3346688‑3346701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.