New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	1686539 =	44 (0.960)	6 (0.150) +CAACG	3/86	NT	13.0%	coding (567/930 nt)	tus	inhibitor of replication at Ter, DNA‑binding protein
	?	W3110S.gb	3346688 =	46 (1.000)					coding (256/492 nt)	ptsN	sugar‑specific enzyme IIA component of PTS

TTTCAGGCTTTTTTCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/1686557‑1686539 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTTTCGTTCAGCT  >  W3110S.gb/3346688‑3346701                    |||||               TTTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAGCT  <  1:4547195/38‑1 TTTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAGC   >  1:2475887/1‑37 TTTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAG    >  1:217409/1‑36  TTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAGC   >  1:4048000/1‑36  TTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAG    >  1:2229201/1‑35  TTCAGGGTTTTTTCCAGCCAACGGTTTTCGTTCAG    >  1:3202021/1‑35                    |||||               TTTCAGGCTTTTTTCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/1686557‑1686539 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTTTCGTTCAGCT  >  W3110S.gb/3346688‑3346701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.