| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1686539 = | 44 (0.960) | 6 (0.150) +CAACG |
3/86 | NT | 13.0% | coding (567/930 nt) | tus | inhibitor of replication at Ter, DNA‑binding protein |
| ? | W3110S.gb | 3346688 = | 46 (1.000) | coding (256/492 nt) | ptsN | sugar‑specific enzyme IIA component of PTS | |||||
CCGGTATCGGCAATGGTATTGCCATTCCGCATGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGACAACCAACCGGTGGACTTACTTTTTG > W3110S.gb/3346620‑3346757 | ccGGTATCGGCAATGGTATTGCCATTCCGCATGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGtt > 1:1870054/1‑71 (MQ=255) gTATCGGCAATGGTATTGCCATTCCGCATGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTc < 1:2948971/71‑1 (MQ=255) tCGGCAATGGTATTGCCATTCCGCATGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGtt < 1:39328/71‑1 (MQ=255) ggCAATGGTATTGCCATTCCGCATGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTTc < 1:93414/70‑1 (MQ=255) ggTATTGCCATTCCGCATGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCg > 1:2542923/1‑61 (MQ=255) gTATTGCCATTCCGCATGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGa > 1:4588537/1‑70 (MQ=255) ccATTCCGCATGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGcc < 1:194091/70‑1 (MQ=255) aTTCCGCATGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGt < 1:4137175/53‑1 (MQ=255) tCCGCATGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGtt > 1:4510108/1‑52 (MQ=255) ccGCATGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCt > 1:3599915/1‑56 (MQ=255) ccGCATGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGc > 1:4086743/1‑71 (MQ=255) ccGCATGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGc > 1:3466438/1‑71 (MQ=255) cGCATGCCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGGTTGCGTTCAGCTCGAAACGCCTATAGCt < 1:1558624/71‑1 (MQ=255) gCATGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCtt < 1:598175/71‑1 (MQ=255) tGGCATACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGa < 1:4040932/54‑1 (MQ=255) tGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCTTTCAGCTCGAAACGCCTATAGCTTTc < 1:654721/70‑1 (MQ=255) tGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGa < 1:3067975/54‑1 (MQ=255) tGGCAAACTGGAAGAAGATACTCTGAGCGCCGTTGGCGTTTTCGTTGAGCTCGAAACGCCTATAGCTTTc > 1:3311442/1‑70 (MQ=255) gCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTTCa > 1:685233/1‑46 (MQ=255) aaCTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTTc < 1:4189754/42‑1 (MQ=255) aaCTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGAtag > 1:1876356/1‑68 (MQ=255) cTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGtt > 1:4480906/1‑39 (MQ=255) cTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGtt > 1:4393139/1‑39 (MQ=255) cTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGtt > 1:2469694/1‑39 (MQ=255) cTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGt > 1:4567338/1‑38 (MQ=255) cTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTTc > 1:4032826/1‑40 (MQ=255) cTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTCCAGCt > 1:2351169/1‑44 (MQ=255) tGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCAt > 1:1451763/1‑70 (MQ=255) gaagaaGATACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCg < 1:3457202/70‑1 (MQ=255) tttcagggttttttccagccaacgGTTTTCGTTCAg > 1:217409‑M2/25‑36 (MQ=255) tttcagggttttttccagccaacgGTTTTCGTTCAGc > 1:2475887‑M2/25‑37 (MQ=255) tttcagggttttttccagccaacgGTTTTCGTTCAGCt < 1:4547195‑M2/14‑1 (MQ=255) gaagaTACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGa > 1:3053165/1‑41 (MQ=255) gaagaTACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGAcaa > 1:2236244/1‑71 (MQ=255) ttcagggttttttccagccaacgGTTTTCGTTCAg > 1:2229201‑M2/24‑35 (MQ=255) ttcagggttttttccagccaacgGTTTTCGTTCAg > 1:3202021‑M2/24‑35 (MQ=255) ttcagggttttttccagccaacgGTTTTCGTTCAGc > 1:4048000‑M2/24‑36 (MQ=255) agaTACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGAcaac > 1:341671/1‑70 (MQ=255) aTACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGAc < 1:3093824/65‑1 (MQ=255) tACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGa > 1:2127460/1‑36 (MQ=255) ctctGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGAcaa > 1:535983/1‑64 (MQ=255) ctctGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGAcaa > 1:2752462/1‑64 (MQ=255) ctctGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGACAACCAACCg > 1:2060255/1‑71 (MQ=255) tctGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGc < 1:2896639/45‑1 (MQ=255) tctGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGACaaccaacc < 1:4533240/69‑1 (MQ=255) ctGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGACAACCAACCGGt > 1:2345546/1‑71 (MQ=255) tGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGa > 1:2662707/1‑49 (MQ=255) tGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGAcaac > 1:722476/1‑62 (MQ=255) cgcgcCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGACAACCAACCGGTgg < 1:3460183/70‑1 (MQ=255) cgcgcCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGACAACCAACCGGTgg < 1:1557644/70‑1 (MQ=255) gcCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGACAACCAACCGGTg < 1:3797099/66‑1 (MQ=255) gcCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGACAACCAACCGGTg < 1:1562896/66‑1 (MQ=255) gTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGACAACCAACCGGTg > 1:2479589/1‑63 (MQ=255) ttGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGACAACCAACCGGTGGactt < 1:316557/67‑1 (MQ=255) tGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGACAACCAACCGGTGGACTTACttt > 1:1852787/1‑71 (MQ=255) cGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGACAACCAACCGGTGGACTTACTTTTTg < 1:538675/71‑1 (MQ=255) | CCGGTATCGGCAATGGTATTGCCATTCCGCATGGCAAACTGGAAGAAGATACTCTGCGCGCCGTTGGCGTTTTCGTTCAGCTCGAAACGCCTATAGCTTTCGATGCCATCGACAACCAACCGGTGGACTTACTTTTTG > W3110S.gb/3346620‑3346757 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |