| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2564137 = | 4 (0.090) | 11 (0.270) +ATGCG |
9/86 | NT | 42.7% | coding (1404/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase |
| ? | W3110S.gb | 4011453 = | 29 (0.630) | coding (575/2736 nt) | rbbA | fused ribosome‑associated ATPases | |||||
GGTACGCCTCTTTTTGGCGGATCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2564202‑2564137‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTATTCGCCAGCGGC > W3110S.gb/4011453‑4011467 ||||| GGTACGCCTCTTTTTGGCGGATCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAATGCG > 1:1410882/1‑71 CGCCTCTTTTTGGCGGATCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAATGCGGTAT < 1:833473/71‑1 CGCCTCTTTTTGGCGGATCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAATGCGGTAT < 1:2401327/71‑1 CGCCTCTTTTTGGCGGATCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAATGCGGTA < 1:4552219/70‑1 GCCTCTTTTTGGCGGATCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAATGCGGTATT > 1:3090077/1‑71 GCCTCTTTTTGGCGGATCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAATGCGGTAT < 1:3522419/70‑1 TTTTTGGCGTATCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAATGCGGTATTCGC < 1:1716608/69‑1 TTTTTGGCGGATCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAATGCGGTATTCGC < 1:1421948/69‑1 TTTTTGGCGGATCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAATGCGGTATTCGC > 1:3321027/1‑69 TTTTTGGCGGATCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAATGCGGTATT > 1:1441885/1‑66 TTTGGCGGATCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAATGCGGTATTCGCC < 1:2424230/68‑1 TTGGCGGATCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAATGCGGTATTCGCCAGC < 1:3048061/70‑1 GGATCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAA > 1:558817/1‑49 ATCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAATG < 1:1841594/49‑1 TCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAATGCGG < 1:1324575/51‑1 TCGGTTGTGCCGGTGACGGTGAAATAACTCGCATTTCCTTCCTGAATGCGGTATTCGCCAGCGGt > 1:1717836/1‑64 GTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAA > 1:657385/1‑43 GCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGAA > 1:1238824/1‑38 GTGACGGTGAAATCACTCGCATTTCCTTCCTGAATGCGGTA > 1:66303/1‑41 TGACGGTGAAATCACTCGCATTTCCTTCCTTAATGCGGTATTC < 1:3704108/43‑1 ACGGTGAAATCACTCGCATTTCCTTCCTGAATGCGG < 1:2239078/36‑1 ACGGTGAAATCACTCGCATTTCCTTCCTGAATGCGG < 1:926707/36‑1 GAAATCACTCGCATTTCCTTCCTGAATGCGGTATTCGCCAGCGG > 1:3049203/1‑44 GAAATCACTCGCATTTCCTTCCTGAATGCGGTATTCGCCAGCGG > 1:4602304/1‑44 AAATCACTCGCATTTCCTTCCTGAATGCGGTATTCGCCAG < 1:2528297/40‑1 AAATCACTAGCATTTCCTTCCTGAATGCGGTATTCGCCAGCGG > 1:1344371/1‑43 ||||| GGTACGCCTCTTTTTGGCGGATCGGTTGTGCCGGTGACGGTGAAATCACTCGCATTTCCTTCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2564202‑2564137‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTATTCGCCAGCGGC > W3110S.gb/4011453‑4011467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |