| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3750592 | 0 (0.000) | 40 (0.950) | 26/88 | NT | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | W3110S.gb | 3751792 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
ATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3750521‑3750592‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCA > W3110S.gb/3751792‑3751859 ATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACT > 1:275518/1‑70ATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACT > 1:2324895/1‑70 TCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAA < 1:2097504/71‑1 CCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAA > 1:49558/1‑70 CTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAAC < 1:3385998/71‑1 GTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAAC < 1:1570969/69‑1 TGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAG > 1:2543657/1‑71 TATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAA > 1:3952359/1‑71 TATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAA > 1:1337409/1‑71 TTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAAT > 1:326530/1‑70 CATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAAC < 1:2419561/71‑1 CATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAAC < 1:713129/71‑1 CATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAAC < 1:718689/71‑1 CTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGA < 1:372617/69‑1 CTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGA < 1:3210034/67‑1 TACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGA > 1:3747283/1‑71 CCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACC > 1:4077443/1‑71 CCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACC < 1:1003810/71‑1 CCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACC > 1:3318065/1‑71 CCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAAC < 1:1553010/48‑1 AATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGC > 1:2232055/1‑70 AATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAAT > 1:1284932/1‑50 ATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTT > 1:178407/1‑67 TTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAA < 1:3023321/71‑1 TTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAA < 1:3777652/71‑1 TTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAA < 1:523852/71‑1 TTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAA < 1:771187/71‑1 TTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAA < 1:1711877/71‑1 CGCCAGATATATATG‑AAGCACCATCATTTACTAAAACAA > 1:3217510/1‑39 AGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCA > 1:3327556/1‑70 TATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAACGCAA < 1:2795383/68‑1 ATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAAT > 1:717658/1‑70 ATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAAT > 1:2172177/1‑70 TATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAt < 1:1858343/44‑2 TATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTA < 1:2018868/71‑1 TATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGA < 1:1900900/45‑1 TATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGA < 1:3788168/45‑1 TATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGA < 1:944821/45‑1 TATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATT > 1:3683670/1‑68 TGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGA < 1:4127516/70‑1 TGCAAGCACCATCATTTACTAAAACAAGTAAATAAACG > 1:585009/1‑38 GCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATA > 1:1126501/1‑71 CAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAG > 1:1357161/1‑40 CACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAA > 1:2432358/1‑51 ATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAAC > 1:1604729/1‑70 TCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACA > 1:27598/1‑70 TCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCA < 1:292081/43‑1 CATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAA > 1:436741/1‑71 ATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAA > 1:2274384/1‑70 ATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTA > 1:3032700/1‑54 TTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAA < 1:3466235/54‑1 TTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAA > 1:3667670/1‑43 TTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGC < 1:769869/39‑1 TTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGA < 1:715836/55‑1 TACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAA > 1:2874722/1‑67 CTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGAT < 1:1749421/70‑1 TAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGAT < 1:1076561/69‑1 TAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAA < 1:1549460/38‑1 AAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCA > 1:984775/1‑70 AAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCA > 1:4206684/1‑69 AAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACA < 1:2822239/60‑1 AAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTA > 1:521968/1‑46 AAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAA > 1:3303586/1‑43 AAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAA > 1:1704994/1‑43 AAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAA > 1:3655640/1‑42 AAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAG > 1:132025/1‑37 AAACAAGTAAATAAACGAGAGATGAACTTTGCAAAAG > 1:67289/1‑37 ATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3750521‑3750592‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCA > W3110S.gb/3751792‑3751859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |