| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3750592 | 0 (0.000) | 40 (0.950) | 26/88 | NT | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | W3110S.gb | 3751792 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
AAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCA > W3110S.gb/3751724‑3751859 | ctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAAc < 1:3385998‑M2/3‑1 (MQ=255) gtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAAc < 1:1570969‑M2/3‑1 (MQ=255) tgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAg > 1:2543657‑M2/66‑71 (MQ=255) tattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaa > 1:1337409‑M2/62‑71 (MQ=255) tattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaa > 1:3952359‑M2/62‑71 (MQ=255) ttacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaat > 1:326530‑M2/60‑70 (MQ=255) catctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAAc < 1:718689‑M2/15‑1 (MQ=255) catctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAAc < 1:713129‑M2/15‑1 (MQ=255) catctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAAc < 1:2419561‑M2/15‑1 (MQ=255) ctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgaga < 1:372617‑M2/19‑1 (MQ=255) ctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACga < 1:3210034‑M2/17‑1 (MQ=255) taccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGa > 1:3747283‑M2/48‑71 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAAc < 1:1553010‑M2/3‑1 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc < 1:1003810‑M2/26‑1 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 1:3318065‑M2/46‑71 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 1:4077443‑M2/46‑71 (MQ=255) aattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaat > 1:1284932‑M2/40‑50 (MQ=255) aattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGc > 1:2232055‑M2/40‑70 (MQ=255) attcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCttt > 1:178407‑M2/39‑67 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaaa < 1:523852‑M2/34‑1 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaaa < 1:3777652‑M2/34‑1 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaaa < 1:1711877‑M2/34‑1 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaaa < 1:771187‑M2/34‑1 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaaa < 1:3023321‑M2/34‑1 (MQ=255) cgccagatatatatgaagcaccatcatttactaaAACaa > 1:3217510‑M2/35‑39 (MQ=255) agatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCa > 1:3327556‑M2/32‑70 (MQ=255) tatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAACGCaa < 1:2795383‑M2/40‑1 (MQ=255) atatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAAt > 1:2172177‑M2/28‑70 (MQ=255) atatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAAt > 1:717658‑M2/28‑70 (MQ=255) tatatgcaagcaccatcatttactaaAACAAGTAAATAAAcgat < 1:1858343‑M2/18‑2 (MQ=255) tatatgcaagcaccatcatttactaaAACAAGTAAATAAACgaga < 1:1900900‑M2/19‑1 (MQ=255) tatatgcaagcaccatcatttactaaAACAAGTAAATAAACgaga < 1:944821‑M2/19‑1 (MQ=255) tatatgcaagcaccatcatttactaaAACAAGTAAATAAACgaga < 1:3788168‑M2/19‑1 (MQ=255) tatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTa < 1:2018868‑M2/45‑1 (MQ=255) tatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAAtt > 1:3683670‑M2/25‑68 (MQ=255) tgcaagcaccatcatttactaaAACAAGTAAATAAACg > 1:585009‑M2/23‑38 (MQ=255) tgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGa < 1:4127516‑M2/48‑1 (MQ=255) gcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGata > 1:1126501‑M2/22‑71 (MQ=255) caagcaccatcatttactaaAACAAGTAAATAAACgagag > 1:1357161‑M2/21‑40 (MQ=255) caccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaaaa > 1:2432358‑M2/17‑51 (MQ=255) atcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaac > 1:1604729‑M2/13‑70 (MQ=255) tcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCa < 1:292081‑M2/32‑1 (MQ=255) tcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaaca > 1:27598‑M2/12‑70 (MQ=255) catttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaacaaa > 1:436741‑M2/11‑71 (MQ=255) atttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTa > 1:3032700‑M2/10‑54 (MQ=255) atttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaacaaa > 1:2274384‑M2/10‑70 (MQ=255) tttactaaAACAAGTAAATAAACGAGAGATGACCTTTGc < 1:769869‑M2/31‑1 (MQ=255) tttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaaaa > 1:3667670‑M2/9‑43 (MQ=255) tttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTaa < 1:3466235‑M2/46‑1 (MQ=255) ttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGa < 1:715836‑M2/48‑1 (MQ=255) tactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaacaaa > 1:2874722‑M2/7‑67 (MQ=255) ctaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGAt < 1:1749421‑M2/66‑1 (MQ=255) taaAACAAGTAAATAAACGAGAGATGACCTTTGCaaaa < 1:1549460‑M2/35‑1 (MQ=255) taaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGAt < 1:1076561‑M2/66‑1 (MQ=255) aaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATca > 1:984775‑M2/3‑70 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAg > 1:132025‑M2/2‑37 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCaaaa > 1:3303586‑M2/2‑43 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCaaaa > 1:1704994‑M2/2‑43 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCaaa > 1:3655640‑M2/2‑42 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTa > 1:521968‑M2/2‑46 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaaca < 1:2822239‑M2/59‑1 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATca > 1:4206684‑M2/2‑69 (MQ=255) aAACAAGTAAATAAACGAGAGATGAACTTTGCAAAAg > 1:67289‑M2/2‑37 (MQ=255) | AAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCA > W3110S.gb/3751724‑3751859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |