| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 50 (1.090) | 264 (8.110) +AGGGTCCCTAAGTC |
71/68 | NT | 91.8% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 17 (0.370) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
Only 100 of 549 total aligned reads displayed.
GGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGT > W3110S.gb/71195‑71332 | gggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:454373/71‑1 (MQ=255) ggCCAGGCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAt < 1:2234766/71‑1 (MQ=255) ggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:4081197/70‑1 (MQ=255) ggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa < 1:3881920‑M1/71‑2 (MQ=255) cAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa > 1:416585/1‑67 (MQ=255) cAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag < 1:3026304‑M1/69‑3 (MQ=255) aGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTgg > 1:1836562/1‑70 (MQ=255) cccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtcc > 1:337081‑M1/1‑64 (MQ=255) cccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtcc > 1:1928236‑M1/1‑64 (MQ=255) ccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa > 1:4436455‑M1/1‑63 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:1215994‑M1/71‑10 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:2634967‑M1/71‑10 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:3793747‑M1/71‑10 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:537001‑M1/71‑10 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:2260964‑M1/71‑10 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:3208624‑M1/71‑10 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:517708‑M1/71‑10 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccc > 1:3461557‑M1/1‑62 (MQ=255) gagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAG‑TGTCATAAagggtccctaa < 1:3390131‑M1/71‑12 (MQ=255) agcgagTTGCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCaaaa < 1:4590803/60‑1 (MQ=255) agcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccc > 1:2950260‑M1/1‑60 (MQ=255) agcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag < 1:4095951‑M1/62‑3 (MQ=255) gcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa > 1:2433837‑M1/1‑59 (MQ=255) cgagTTCCGGGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa > 1:4044704‑M1/1‑58 (MQ=255) tttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGa > 1:2713852/1‑70 (MQ=255) ttccgtgCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaa < 1:164867‑M1/68‑18 (MQ=255) ttccgtgCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa < 1:3186924‑M1/62‑12 (MQ=255) tccgtGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaa > 1:3931581‑M1/3‑53 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaa > 1:3630666‑M1/2‑52 (MQ=255) ccGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:4234072/51‑1 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTTAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:886070‑M1/71‑22 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:1985296‑M1/71‑22 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa > 1:207940‑M1/1‑50 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg > 1:1707382‑M1/1‑49 (MQ=255) gCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga > 1:4198720‑M1/1‑48 (MQ=255) gCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:501644‑M1/70‑23 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa > 1:348399/1‑47 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaa < 1:4476700‑M1/71‑25 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:2743343‑M1/1‑47 (MQ=255) ggTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa < 1:3556395‑M1/56‑12 (MQ=255) ggTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTgt < 1:3716938/49‑2 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa > 1:1165971/1‑44 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggc < 1:1343233‑M1/71‑28 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:631837‑M1/1‑44 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtcccta < 1:2994999‑M1/54‑11 (MQ=255) tgtgGAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAaggg > 1:186420‑M1/1‑42 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtcc > 1:2788028‑M1/1‑41 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAAtt < 1:475306/62‑1 (MQ=255) tgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggccca < 1:2296384‑M1/70‑31 (MQ=255) tgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag < 1:676374‑M1/42‑3 (MQ=255) gaagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccag < 1:1514473‑M1/70‑32 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag > 1:3143634‑M1/1‑38 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag > 1:1005933‑M1/1‑38 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTgg > 1:1577714/1‑42 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:1675569/37‑1 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAt > 1:110718/1‑38 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtct < 1:1136484‑M1/71‑35 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCATGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt < 1:2159334‑M1/71‑36 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt > 1:3099671‑M1/1‑36 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagg > 1:102334‑M1/1‑36 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagg > 1:3074493‑M1/1‑36 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc < 1:3852353/52‑1 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACg < 1:2534087/68‑1 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:1617753‑M1/71‑38 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:2356227‑M1/71‑38 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:3256745‑M1/71‑38 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:287984‑M1/71‑38 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcg < 1:2911293‑M1/71‑39 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc > 1:956814‑M1/1‑33 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt > 1:4001998‑M1/1‑33 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAg > 1:194918/1‑69 (MQ=255) gTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt < 1:3418413‑M1/65‑36 (MQ=255) tGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactg < 1:4297434‑M1/71‑43 (MQ=255) aaTGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgag > 1:3670656‑M1/1‑27 (MQ=255) aaTGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgag > 1:3665302‑M1/1‑27 (MQ=255) atgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctt > 1:3302652‑M1/1‑23 (MQ=255) atgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaagg > 1:3444729‑M1/1‑23 (MQ=255) tgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaa > 1:1458876‑M1/1‑22 (MQ=255) gTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttc > 1:2660925‑M1/1‑21 (MQ=255) tAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgag < 1:1069628‑M1/64‑45 (MQ=255) tAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgaacctttc < 1:1401804‑M1/70‑51 (MQ=255) gCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgtt > 1:565742‑M1/1‑18 (MQ=255) ccGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttt < 1:2097157‑M1/71‑55 (MQ=255) cGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtct < 1:1876661‑M1/50‑35 (MQ=255) cGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtct < 1:432760‑M1/50‑35 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt < 1:605151‑M1/49‑36 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:832150‑M1/36‑23 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttattt > 1:2032406‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttattt < 1:2184758‑M1/71‑60 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtcttt > 1:2587992‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaa > 1:1289424‑M1/1‑12 (MQ=255) aGTTGTCATAAagggtccctaagtctaaaacgaaaggcc < 1:925591‑M1/39‑29 (MQ=255) aGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAg < 1:2847728/64‑1 (MQ=255) ttGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttattt < 1:1794428‑M1/68‑60 (MQ=255) gTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctt > 1:796462‑M1/1‑7 (MQ=255) aTAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGa > 1:4140552/1‑58 (MQ=255) aaTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGt > 1:3961195/1‑69 (MQ=255) aagggtccctaagtctaaaacgaaaggcccagtctttcgactgagc > 1:750724‑M1/1‑1 (MQ=255) aTTGGTAACGAATCAGACTATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGa > 1:3343262/1‑55 (MQ=255) aTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTg > 1:2465465/1‑62 (MQ=255) | GGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGT > W3110S.gb/71195‑71332 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |