| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 50 (1.090) | 264 (8.110) +AGGGTCCCTAAGTC |
71/68 | NT | 91.8% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 17 (0.370) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
Only 100 of 349 total aligned reads displayed.
CGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTA > W3110S.gb/3464811‑3464942 | ttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa < 1:2237459‑M2/2‑1 (MQ=255) ccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:4450327‑M2/67‑71 (MQ=255) cgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAAc > 1:1586816‑M2/66‑71 (MQ=255) gtgccggttgtgaagaaaaagttaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:886070‑M2/7‑1 (MQ=255) gtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:1122015‑M2/7‑1 (MQ=255) gtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:1985296‑M2/7‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:3473952‑M2/8‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:2307495‑M2/8‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:4169211‑M2/8‑1 (MQ=255) gccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:501644‑M2/8‑1 (MQ=255) gccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa > 1:4198720‑M2/63‑70 (MQ=255) ccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa > 1:4086367‑M2/62‑69 (MQ=255) ggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAgg < 1:3270298‑M2/12‑1 (MQ=255) gttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaa < 1:2933160‑M2/3‑1 (MQ=255) gttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAgg > 1:4506195‑M2/59‑70 (MQ=255) gttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGc > 1:1104537‑M2/59‑71 (MQ=255) ttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc > 1:818516‑M2/58‑71 (MQ=255) tgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:3528862‑M2/57‑61 (MQ=255) gtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc > 1:2746003‑M2/56‑69 (MQ=255) gtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc > 1:2787460‑M2/56‑69 (MQ=255) tgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAg > 1:3691719‑M2/55‑71 (MQ=255) gaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:930203‑M2/7‑1 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtgTAAAACGAAAGGCCCAGTc > 1:1830928‑M2/53‑71 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:682972‑M2/8‑1 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAg > 1:255419‑M2/53‑63 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGt < 1:541063‑M2/18‑1 (MQ=255) gaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:3569369‑M2/51‑55 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:1617753‑M2/23‑1 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:2995297‑M2/23‑1 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCg < 1:349608‑M2/24‑1 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCg < 1:3421559‑M2/24‑1 (MQ=255) ggcggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa < 1:3798397/71‑1 (MQ=34) aagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaa > 1:1696340‑M2/47‑49 (MQ=255) aagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:3653781‑M2/8‑1 (MQ=255) aagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGa < 1:3114575‑M2/25‑1 (MQ=255) aagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGa < 1:2696799‑M2/25‑1 (MQ=255) agtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGAc > 1:3865494‑M2/46‑71 (MQ=255) aatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAg < 1:2082908‑M2/30‑1 (MQ=255) tgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa > 1:2032725‑M2/40‑48 (MQ=255) tgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGcc > 1:2257259‑M2/40‑71 (MQ=255) tgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGcc < 1:375006‑M2/32‑1 (MQ=255) gatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAg > 1:514068‑M2/39‑55 (MQ=255) gatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:3946237‑M2/23‑1 (MQ=255) gatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTg < 1:1872376‑M2/28‑1 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAgg > 1:3444729‑M2/38‑49 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAgg > 1:1008469‑M2/38‑49 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCtt > 1:3302652‑M2/38‑71 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCtt > 1:103204‑M2/38‑71 (MQ=255) tgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa > 1:3085391‑M2/37‑45 (MQ=255) tgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt < 1:3349052‑M2/33‑1 (MQ=255) gtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:1456536‑M2/7‑1 (MQ=255) gtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa > 1:2894422‑M2/36‑43 (MQ=255) tagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAg < 1:1069628‑M2/30‑1 (MQ=255) tagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAACCTTTc < 1:1401804‑M2/36‑1 (MQ=255) gccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:4238917‑M2/33‑37 (MQ=255) gccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtt > 1:565742‑M2/33‑71 (MQ=255) ccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:636771‑M2/8‑1 (MQ=255) gtcaagttgtcataaagggtccctaagtcTAAAACGaa > 1:1150071‑M2/30‑38 (MQ=255) gtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTa > 1:2605303‑M2/30‑71 (MQ=255) gtcaagttgtcataaagggtccataagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTa < 1:2380139‑M2/42‑1 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACGa < 1:2173045‑M2/8‑1 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt < 1:1333478‑M2/20‑1 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:2114093‑M2/23‑1 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaaa > 1:2718509‑M2/27‑36 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaaa > 1:2529176‑M2/27‑36 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaaa > 1:1289424‑M2/27‑36 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAg > 1:2646155‑M2/27‑37 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGa > 1:337677‑M2/27‑51 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt > 1:3643594‑M2/27‑71 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt < 1:2184758‑M2/45‑1 (MQ=255) ttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTc > 1:3669863‑M2/24‑42 (MQ=255) ttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGa > 1:1358922‑M2/24‑48 (MQ=255) ttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt < 1:1794428‑M2/45‑1 (MQ=255) gtcataaagggtccctaagtcTAAAACGAAAGGCCCa > 1:47860‑M2/22‑37 (MQ=255) gtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCtt > 1:796462‑M2/22‑55 (MQ=255) cGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:4020164/50‑1 (MQ=38) tcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACt < 1:1190434‑M2/27‑1 (MQ=255) tcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg < 1:2022224‑M2/50‑4 (MQ=255) tcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg < 1:4341090‑M2/50‑4 (MQ=255) cataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAg > 1:2950051‑M2/20‑49 (MQ=255) ataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt < 1:617890‑M2/33‑1 (MQ=255) taaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:4301440‑M2/23‑1 (MQ=255) taaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCg < 1:3189056‑M2/24‑1 (MQ=255) taaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCg < 1:3197685‑M2/24‑1 (MQ=255) aaagggtccctaagtcTAAAACGAAAGGCCCAGTCt < 1:1854796‑M2/20‑1 (MQ=255) aaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGa > 1:28641‑M2/17‑41 (MQ=255) aCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgg < 1:3971409/70‑1 (MQ=35) aagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGa > 1:4589461‑M2/16‑44 (MQ=255) aagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAg > 1:3143597‑M2/16‑45 (MQ=255) aagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc > 1:750724‑M2/16‑46 (MQ=255) gACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa > 1:3933379/1‑38 (MQ=40) cgtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGa < 1:2431997‑M2/47‑1 (MQ=255) tccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtttt < 1:3037764‑M2/41‑1 (MQ=255) ccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGcc > 1:2335478‑M2/10‑41 (MQ=255) cctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc > 1:3854993‑M2/9‑39 (MQ=255) cctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGttt > 1:1467704‑M2/9‑48 (MQ=255) ctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt < 1:1659079‑M2/45‑1 (MQ=255) caacaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTa < 1:1731391/71‑1 (MQ=34) taagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTc > 1:1957031‑M2/7‑42 (MQ=255) agtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc > 1:1909537‑M2/5‑35 (MQ=255) | CGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTA > W3110S.gb/3464811‑3464942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |