| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 62 (1.380) | 34/94 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGC > W3110S.gb/2173500‑2173627 | aGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGt < 1:2918970/68‑1 (MQ=33)aGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCa < 1:2091256/70‑1 (MQ=35) tCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATcc > 1:1445159/1‑71 (MQ=39) ccGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATccc > 1:1042758/1‑71 (MQ=39) ccGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATccc > 1:4349463/1‑71 (MQ=39) gAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTc > 1:1993792/1‑71 (MQ=255) aaCAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCg < 1:752633/71‑1 (MQ=255) aCAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGt > 1:768654/1‑71 (MQ=255) cAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAg < 1:391393/58‑1 (MQ=31) aTTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGa > 1:1359835/1‑71 (MQ=255) tGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATc < 1:2870289/70‑1 (MQ=255) tGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa > 1:785082/1‑71 (MQ=255) gAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:136809/70‑1 (MQ=255) aaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:1125623/71‑1 (MQ=255) aaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:1010756/71‑1 (MQ=255) aaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:4307976/71‑1 (MQ=255) aCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:526389/70‑1 (MQ=255) aCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTg < 1:932990/71‑1 (MQ=255) ccTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTgccg > 1:2737924/1‑71 (MQ=255) gCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTc > 1:2176066/1‑39 (MQ=40) gCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCtt > 1:1837396/1‑46 (MQ=255) gCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCtt > 1:1322033/1‑46 (MQ=255) tAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTCCCGCCTgcg > 1:1018823/1‑70 (MQ=255) ggCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCt < 1:1935200/70‑1 (MQ=255) cTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTc < 1:4005273/71‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCAGTCATCCCTTCg > 1:459984/1‑37 (MQ=255) tgtCCATATTACGTGGGTAGGATCAGTCATCCCTTCg > 1:1397432/1‑37 (MQ=255) tgtCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTgcc < 1:3455771/55‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTg > 1:4572331/1‑53 (MQ=255) tCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGttt > 1:1059027/1‑71 (MQ=255) tCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGttt < 1:1388166/71‑1 (MQ=255) tCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGttt > 1:4300092/1‑71 (MQ=255) cATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:1242132/44‑1 (MQ=255) ttACGTGGGTAGGATCAGTCATCCGTTCGTGGATCAttt > 1:2224052/1‑39 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:4208147/36‑1 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:3443342/36‑1 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAttt > 1:465218/1‑39 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAttt > 1:971617/1‑39 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:4053628/1‑42 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTgc > 1:1261514/1‑53 (MQ=255) aCGTGGGTAGGATCAGTCATCCCTTCGTGGATCAttt > 1:3456866/1‑37 (MQ=255) aCGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcgc > 1:484494/1‑71 (MQ=255) aCGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcgc > 1:128634/1‑71 (MQ=255) gTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGc < 1:795910/71‑1 (MQ=255) tAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTg < 1:2214924/60‑1 (MQ=255) ggATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcgcgc > 1:205225/1‑64 (MQ=255) gATCAGTCATCCCTTCGTGGATCATTTTAACTGCCGCCTgcgc < 1:2329401/43‑1 (MQ=255) | AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGC > W3110S.gb/2173500‑2173627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |