| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 62 (1.380) | 34/94 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 155 total aligned reads displayed.
GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920208‑3920348 | gcctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:1937756‑M2/1‑1 (MQ=255)gcctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:814906‑M2/1‑1 (MQ=255) gAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAaca > 1:3255136/1‑71 (MQ=255) aaGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAaca > 1:807051/1‑70 (MQ=255) aaGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC < 1:4415581‑M2/71‑1 (MQ=255) aaGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC < 1:3923684‑M2/71‑1 (MQ=255) aGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:1870163‑M2/1‑70 (MQ=255) tccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTtcg < 1:2020162‑M2/8‑2 (MQ=255) cacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa > 1:233006/1‑63 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:2596218‑M2/9‑1 (MQ=255) ggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa < 1:2451280‑M2/11‑1 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt < 1:2958653‑M2/63‑2 (MQ=255) aacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:3070007‑M2/1‑1 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctta > 1:331066‑M2/1‑61 (MQ=255) tGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:3643227‑M2/69‑11 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccag < 1:3306952‑M2/70‑14 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:103534‑M2/9‑1 (MQ=255) ccTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc < 1:2080146‑M2/70‑15 (MQ=255) tgaaaagaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:2367‑M2/52‑71 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:4093081‑M2/52‑71 (MQ=255) gaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt > 1:381823‑M2/51‑71 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:1141631‑M2/21‑1 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTc < 1:367617‑M2/22‑1 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAaca > 1:1074495/1‑51 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:269385‑M2/71‑20 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaccca > 1:1561950‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaccca > 1:3938225‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC < 1:3780283‑M2/52‑1 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga > 1:2419525‑M2/1‑48 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgg < 1:4046493‑M2/70‑23 (MQ=255) agagATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct < 1:2241489‑M2/53‑7 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:2585137‑M2/1‑46 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:3719367‑M2/51‑6 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:4240125‑M2/51‑6 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt > 1:160885‑M2/43‑70 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt > 1:155467‑M2/43‑70 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:3557269‑M2/9‑1 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtga < 1:4164273‑M2/30‑1 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtga < 1:4537553‑M2/30‑1 (MQ=255) gaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacg < 1:772465‑M2/71‑28 (MQ=255) gaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacg < 1:2792117‑M2/71‑28 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat > 1:1561983‑M2/40‑70 (MQ=255) tttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga > 1:1305847‑M2/1‑42 (MQ=255) ctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat < 1:396072‑M2/31‑1 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttagcagcaatag < 1:3004094‑M2/59‑19 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:3618633‑M2/60‑20 (MQ=255) cgcttaggcctgtgtccatattacgagggtaggatcACACttcgg > 1:2324240‑M2/37‑43 (MQ=255) taggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg > 1:1343807‑M2/33‑70 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTaga > 1:2412595‑M2/32‑44 (MQ=255) gcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:674889‑M2/24‑1 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtga > 1:2781891‑M2/1‑33 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtga > 1:4552420‑M2/1‑33 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt < 1:1338609‑M2/69‑37 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtg < 1:3362962‑M2/35‑3 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct > 1:3238746‑M2/1‑32 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat > 1:3475850‑M2/1‑32 (MQ=255) ctgtgtcaatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:4244689‑M2/28‑71 (MQ=255) tgtgtccatattacgtgggtagtatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCtt > 1:123456‑M2/27‑71 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgctcttacc < 1:3344688‑M2/40‑11 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagt < 1:73430‑M2/70‑41 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga > 1:215182‑M2/1‑30 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:51560‑M2/40‑11 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa > 1:1739033‑M2/1‑29 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt > 1:2556039‑M2/1‑29 (MQ=255) cTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaa > 1:4355562‑M2/1‑27 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:588979‑M2/23‑70 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:3065167‑M2/19‑44 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:186331‑M2/21‑1 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaa < 1:287942‑M2/34‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:3172246‑M2/17‑39 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:131506‑M2/17‑39 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:88324‑M2/17‑39 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:2474176‑M2/17‑71 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:773929‑M2/17‑71 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:3836790‑M2/17‑71 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:4615902‑M2/17‑71 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCCAAGCCTTTGTCAGCGtt > 1:198837‑M2/17‑71 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:2916230‑M2/16‑41 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:2289179‑M2/16‑41 (MQ=255) gataAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaatctctcagtcag > 1:2530797‑M2/1‑17 (MQ=255) gtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAc < 1:1443220‑M2/59‑1 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatag > 1:4604553‑M2/1‑16 (MQ=255) tgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:2143575‑M2/12‑37 (MQ=255) aGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:987021‑M2/1‑13 (MQ=255) gtgtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag < 1:3485928‑M2/68‑57 (MQ=255) gtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAtt > 1:3936533‑M2/9‑71 (MQ=255) tgtACGAACACtgatcttacccagcaatagtggacacgcggctaag > 1:2092848‑M2/1‑11 (MQ=255) tgtACGAACACtgatcttacccagcaatagtggacacgcggctaag > 1:1384207‑M2/1‑11 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaa < 1:551146‑M2/44‑35 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaa < 1:405369‑M2/44‑35 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag > 1:404376‑M2/1‑9 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaa > 1:873292‑M2/1‑9 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaa > 1:3116322‑M2/1‑9 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:3204267‑M2/71‑65 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:4216609‑M2/71‑65 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactc > 1:455107‑M2/1‑7 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgc > 1:719401‑M2/1‑7 (MQ=255) atcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaagcc < 1:1054332‑M2/43‑1 (MQ=255) gAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:4596711‑M2/1‑6 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATa > 1:1191019‑M2/1‑71 (MQ=255) | GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920208‑3920348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |