| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1499899 = | 41 (0.890) | 26 (0.780) +CTTGTTACACCGT |
6/70 | NT | 42.6% | coding (1300/1626 nt) | mdoD | glucan biosynthesis protein, periplasmic |
| ? | W3110S.gb | 3737712 = | 55 (1.200) | coding (423/723 nt) | yieK | predicted 6‑phosphogluconolactonase | |||||
TGGATTTGGTGGTGCTGGGATTAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGGAGAGATGGTTGATATTGTGGCGCATGGCGAGTTG > W3110S.gb/3737645‑3737781 | tGGATTTGGTGGTGCTGGGATTAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTc > 1:1172193/1‑71 (MQ=255) ggATTTGGTGGTGCTGGGATTAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTc > 1:2570686/1‑70 (MQ=255) ggtggtGCTGGGATTAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAg > 1:2730701/1‑70 (MQ=255) gtggtgCTGGGATTAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCa < 1:1141834/71‑1 (MQ=255) gtgCTGGGATTAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCaaa < 1:4324444/70‑1 (MQ=255) gtgCTGGGATTAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCaaa < 1:1637667/70‑1 (MQ=255) tgCTGGGATTAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTcc < 1:926032/60‑1 (MQ=255) tgCTGGGATTAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAAcc < 1:750401/71‑1 (MQ=255) cTGGGATTAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCg < 1:3128201/70‑1 (MQ=255) gggATTAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCAtt > 1:4156739/1‑53 (MQ=255) ggATTAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTgg < 1:1352026/70‑1 (MQ=255) ggATTAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGa < 1:1795207/71‑1 (MQ=255) aTTAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGt > 1:1830875/1‑71 (MQ=255) aTTAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTCGAGt < 1:2841311/71‑1 (MQ=255) ttAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGtt < 1:2443592/71‑1 (MQ=255) ttAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGtt < 1:3754843/71‑1 (MQ=255) gTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCg < 1:3642744/71‑1 (MQ=255) gTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCg < 1:3299762/71‑1 (MQ=255) gTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCg < 1:1268954/71‑1 (MQ=255) gTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCg < 1:1259369/71‑1 (MQ=255) gCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGa > 1:4222472/1‑70 (MQ=255) gCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGAt > 1:3606638/1‑71 (MQ=255) cAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATc < 1:4004068/71‑1 (MQ=255) cAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATc < 1:1044372/71‑1 (MQ=255) gATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCaaa > 1:2030799/1‑52 (MQ=255) gATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCaa < 1:2362086/51‑1 (MQ=255) gATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGt > 1:1978077/1‑56 (MQ=255) gATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGt > 1:2300081/1‑56 (MQ=255) tGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAAc > 1:339285/1‑51 (MQ=255) ggTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTg > 1:3344988/1‑54 (MQ=255) ggTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATcc < 1:4515933/67‑1 (MQ=255) tCATTTTTGTGGCAATTTGCCGAATACGACCCATTTc < 1:3102452/37‑1 (MQ=255) aTTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGgagag < 1:943841/71‑1 (MQ=255) aTTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGgaga < 1:521546/70‑1 (MQ=255) tttttGTGGCAATTTGCCGAATACGACCCATTTCCATGa < 1:2680899/39‑1 (MQ=255) tttttGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTg < 1:353351/49‑1 (MQ=255) tttttGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTg < 1:3031297/49‑1 (MQ=255) tttttGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGgaga < 1:1161163/69‑1 (MQ=255) atgggatagtgttcacccttgttacaccgtTTTCCATGAg > 1:431552‑M2/31‑40 (MQ=255) atgggatagtgttcacccttgttacaccgtTTTCCATGAGCaaa > 1:2754964‑M2/31‑44 (MQ=255) atgggatagtgttcacccttgttacaccgtTTTCCATGAGCAAAc > 1:2090480‑M2/31‑45 (MQ=255) ttttGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGt > 1:945068/1‑47 (MQ=255) ttttGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGt > 1:3842192/1‑47 (MQ=255) tgggatagtgttcacccttgttacaccgtTTTCCa > 1:3329270‑M2/30‑35 (MQ=255) tgggatagtgttcacccttgttacaccgtTTTCCAt < 1:2189457‑M2/7‑1 (MQ=255) tgggatagtgttcacccttgttacaccgtTTTCCATg < 1:3844505‑M2/8‑1 (MQ=255) tgggatagtgttcacccttgttacaccgtTTTCCATGa > 1:1733143‑M2/30‑38 (MQ=255) tgggatagtgttcacccttgttacaccgtTTTCCATGa > 1:1192440‑M2/30‑38 (MQ=255) tgggatagtgttcacccttgttacaccgtTTTCCATGAGCa < 1:3725041‑M2/12‑1 (MQ=255) tttGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGAt > 1:60061/1‑58 (MQ=255) tttGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATc > 1:1853756/1‑59 (MQ=255) tttGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGgagaga > 1:1734774/1‑69 (MQ=255) gggatagtgttcacccttgttacacggtTTTCCATGAGCa < 1:911709‑M2/12‑1 (MQ=255) gggatagtgttcacccttgttacaccgtTTTCCATGa > 1:1879685‑M2/29‑37 (MQ=255) gggatagtgttcacccttgttacaccgtTTTCCATGa > 1:2745402‑M2/29‑37 (MQ=255) ggatagtgttcacccttgttacaccgtTTTCCATGAg > 1:4186934‑M2/28‑37 (MQ=255) ggatagtgttcacccttgttacaccgtTTTCCATGAGc > 1:2256620‑M2/28‑38 (MQ=255) ggatagtgttcacccttgttacaccgtTTTCCATGAGCaaa > 1:3366628‑M2/28‑41 (MQ=255) ggatagtgttcacccttgttacaccgtTTTCCATGAGCaaa > 1:622138‑M2/28‑41 (MQ=255) ggatagtgttcacccttgttacaccgtTTTCCATGAGCaaa < 1:469775‑M2/14‑1 (MQ=255) ggatagtgttcacccttgttacaccgtTTTCCATGAGCa < 1:908281‑M2/12‑1 (MQ=255) ggatagtgttcacccttgttacacagtTTTCCATg > 1:932234‑M2/28‑35 (MQ=255) tgtgGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAg > 1:3167609/1‑60 (MQ=255) tagtgttcacccttgttacaccgtTTTCCATGAGCa < 1:3664710‑M2/12‑1 (MQ=255) tagtgttcacccttgttacaccgtTTTCCATGAGCa < 1:228750‑M2/12‑1 (MQ=255) tagtgttcacccttgttacaccgtTTTCCATGAGCa < 1:2321513‑M2/12‑1 (MQ=255) agtgttcacccttgttacaccgtTTTCCATGAGCaaa > 1:910767‑M2/24‑37 (MQ=255) agtgttcacccttgttacaccgtTTTCCATGAGCa < 1:1244963‑M2/12‑1 (MQ=255) gtgttcacccttgttacaccgtTTTCCATGAGCAAAc > 1:2632596‑M2/23‑37 (MQ=255) cAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGa < 1:2840582/50‑1 (MQ=255) cAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGGAGAGATGGTTGata > 1:355103/1‑71 (MQ=255) aaTTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGGAGAGATGGTTGatat > 1:2627239/1‑71 (MQ=255) ttcacccttgttacaccgtTTTCCATGAGCAAact > 1:880421‑M2/20‑34 (MQ=255) aTTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGGAGAGATGGTTGATAtt > 1:2024355/1‑71 (MQ=255) tttGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATcc < 1:2493821/50‑1 (MQ=255) tttGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGGAGAGATGGTTGATATtg > 1:2209470/1‑71 (MQ=255) ttGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGGAGAGAt > 1:4587313/1‑59 (MQ=255) tGCCGAATACGACCCATTTCCATGAGCAAACCGTGGa > 1:426705/1‑37 (MQ=255) tGCCGAATACGACCCATTTCCATGAGCAAACCGTGGa > 1:3425063/1‑37 (MQ=255) tGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGGAGAGATGGTTGATATtgtg > 1:501478/1‑71 (MQ=255) tGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGGAGAGATGGTTGATATtgt < 1:4472634/70‑1 (MQ=255) aaTACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGa < 1:1028737/40‑1 (MQ=255) aaTACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGgagaga < 1:447075/52‑1 (MQ=255) aaTACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGGAGAGATGGTTGATATtgt < 1:970175/65‑1 (MQ=255) aaTACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGGAGAGATGGTTGATATTGTGgcgc < 1:424421/70‑1 (MQ=255) tACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATc > 1:4232337/1‑40 (MQ=255) aCCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGGAGAGATGGTTGATATTGTGGCGCATGGCGa < 1:2046496/71‑1 (MQ=255) ccATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGGAGAGATGGTTGATATTGTGGCGCATGGCGAGt < 1:3120936/71‑1 (MQ=255) cATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGGAGAGATGGTTGATATTGTGGCGCATGGCGAGtt < 1:2273787/71‑1 (MQ=255) aTTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGGAGAGATGGTTGATATTGTGGCGCATGGCGAGTTg < 1:2659096/71‑1 (MQ=255) tttCCATGAGCAAACCGTGGAGTTCCCGATCCAGGgagaga > 1:3868195/1‑41 (MQ=255) tttCCATGAGCAAACCGTGGAGTTCCCGATCCAGGgaga < 1:2578312/39‑1 (MQ=255) | TGGATTTGGTGGTGCTGGGATTAGGTGCAGATGGTCATTTTTGTGGCAATTTGCCGAATACGACCCATTTCCATGAGCAAACCGTGGAGTTCCCGATCCAGGGAGAGATGGTTGATATTGTGGCGCATGGCGAGTTG > W3110S.gb/3737645‑3737781 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |