New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 1651231	39 (0.850)	4 (0.100) +GGACAA	3/84	NT	12.0%	intergenic (+476/‑92)	ydfC/dicB	hypothetical protein/cell division inhibition protein
	?	W3110S.gb	= 2993865	28 (0.610)					intergenic (‑117/+105)	ygeL/ygeM	hypothetical protein/hypothetical protein

CCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTAAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTA  >  W3110S.gb/2993797‑2993928                                                                     |                                                                ccTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAaaaat                                                               <  1:610385/71‑1 (MQ=255) ccTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAaaaat                                                               <  1:2885601/71‑1 (MQ=255)      cATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAaaaataaaat                                                          >  1:964852/1‑71 (MQ=255)        ttattattaTAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAaaaata                                                              <  1:3526566/65‑1 (MQ=255)        ttattattaTAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAaaaata                                                              <  1:3521405/65‑1 (MQ=255)        ttattattaTAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAAttt                                                        <  1:2426111/71‑1 (MQ=255)           ttattatAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAaaaataaaa                                                           >  1:3396360/1‑65 (MQ=255)           ttattatAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTg                                                     >  1:1734238/1‑71 (MQ=255)           ttattatAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTg                                                     >  1:4185936/1‑71 (MQ=255)             attatAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAaaaataaaa                                                           >  1:1166100/1‑63 (MQ=255)             attatAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCg                                                   >  1:4389677/1‑71 (MQ=255)              ttatAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCg                                                   >  1:4248502/1‑70 (MQ=255)                 taAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTa                                                 >  1:3975076/1‑69 (MQ=255)                   aGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTaaaaa                                             <  1:365489/71‑1 (MQ=255)                   aGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTaaaa                                              <  1:2599392/70‑1 (MQ=255)                   aGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTaaaa                                              <  1:4059216/70‑1 (MQ=255)                   aGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTaaaa                                              >  1:3796008/1‑70 (MQ=255)                     tctaaTCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTaaaaaa                                            <  1:3686951/67‑1 (MQ=255)                       aaaTCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTAAAAAAATa                                         >  1:4495816/1‑71 (MQ=255)                              aaGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTaaaaaaa                                           >  1:376942/1‑62 (MQ=255)                              aaGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTAAAAAAATACCACAgg                                  <  1:1951253/71‑1 (MQ=255)                                    aCATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTAAAAAAATACCACAGGCATTa                             >  1:4539017/1‑70 (MQ=255)                                              aataataatGAAATATAATTAAAAATAAAATTTTTGCGTAAAAAAATACCACAGGCATTAAAAAATCATga                  <  1:992518/71‑1 (MQ=255)                                                      tGAAATATAATAAAAAttgtcctccacccataacac                                             >  1:3768343‑M2/1‑16 (MQ=255)                                                      tGAAATATAATAAAAAttgtcctccacccataacac                                             >  1:1333722‑M2/1‑16 (MQ=255)                                                      tGAAATATAATAAAAAttgtcctccacccataaca                                              >  1:3081454‑M2/1‑16 (MQ=255)                                                       gAAATATAATTAAAAATAAAATTTTTGCGTAAAAAAATACCACAGGCATTaaaaaa                        >  1:979498/1‑56 (MQ=255)                                                       gAAATATAATAAAAAttgtcctccacccataacac                                             <  1:110047‑M2/35‑21 (MQ=255)                                                         aaTATAATTAAAAATAAAATTTTTGCGTAAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTaaaa       <  1:2266193/71‑1 (MQ=255)                                                          atatAATTAAAAATAAAATTTTTGCGTAAAAAAATa                                         >  1:975321/1‑36 (MQ=255)                                                          atatAATTAAAAATAAAATTTTTGCGTAAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTaaaa       <  1:2511812/70‑1 (MQ=255)                                                           tataATTAAAAATAAAATTTTTGCGTAAAAAAATACcaca                                    >  1:2080853/1‑40 (MQ=255)                                                           tataATTAAAAATAAAATTTTTGCGTAAAAAAATACca                                      <  1:845484/38‑1 (MQ=255)                                                            ataATTAAAAATAAAATTTTTGCGTAAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAatat    >  1:3518369/1‑71 (MQ=255)                                                              aaTTAAAAATAAAATTTTTGCGTAAAAAAATACCACAGGCATTaaaa                          <  1:3589127/47‑1 (MQ=255)                                                              aaTTAAAAATAAAATTTTTGCGTAAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTa  >  1:3056870/1‑71 (MQ=255)                                                                   aaaataaaatTTTTGCGTAAAAAAATACCACAGGCATTAAAAAATCATga                  <  1:4011497/50‑1 (MQ=255)                                                                   aaaataaaatTTTTGCGTAAAAAAATACCACAGGCATTAAAAAATCATGAgat               >  1:3423098/1‑53 (MQ=255)                                                                    aaataaaatTTTTGCGTAAAAAAATACCACAGGCATTAAAAAATCATga                  <  1:3092601/49‑1 (MQ=255)                                                                     |                                                                CCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTAAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTA  >  W3110S.gb/2993797‑2993928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.