New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	346427 =	37 (1.050)	40 (1.470) +CAGAGAGCATTT	5/84	NT	55.2%	coding (1241/1587 nt)	prpR	DNA‑binding transcriptional regulator
	?	W3110S.gb	3071050 =	47 (1.330)					coding (229/1164 nt)	pgk	phosphoglycerate kinase

GGAAAGCTTTTTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/346441‑346427 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGCAGCAGAGAGAA  >  W3110S.gb/3071050‑3071065                ||||||||||||                 taAAAGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGA     <  1:701668/38‑1  aAAAGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAG      <  1:2541435/37‑1   AAAGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGAGAc  <  1:623818/41‑2   AAAGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGAGAc  <  1:2275421/41‑2   AAAGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGAGAc  <  1:2148155/41‑2   AAAGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGAGAc  <  1:207056/41‑2   AAAGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGAGAc  <  1:1670888/41‑2   AAAGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGAG    <  1:1058098/39‑1   AAAGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGA     >  1:983292/1‑38    AAGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGAGAc  <  1:2715688/40‑2    AAGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGA       >  1:1958707/1‑35    AAGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGA       >  1:166053/1‑35    AAGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGA       >  1:3222627/1‑35    AAGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGA       >  1:2151783/1‑35    AAGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGA       >  1:223640/1‑35    AAGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGA       >  1:2722048/1‑35     AGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGAGAc  <  1:1007620/39‑2     AGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGAGAc  <  1:2914384/39‑2     AGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGAGAc  <  1:1188801/39‑2     AGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGAGAc  <  1:1429991/39‑2     AGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGAGAc  <  1:68473/39‑2     AGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGAGAc  <  1:2490218/39‑2     AGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGAGAc  <  1:2105368/39‑2     AGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAG      <  1:1174896/35‑1     AGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAG      <  1:719344/35‑1     AGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAG      <  1:979296/35‑1     AGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAG      <  1:581666/35‑1     AGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAG      <  1:2777344/35‑1     AGCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAG      <  1:2874372/35‑1      GCTTTTTTAACAGAGAGCATTTCCGGCAGCAGAGAGAc  <  1:868163/38‑2      GCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGA     >  1:3005395/1‑35      GCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGA     >  1:482723/1‑35      GCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGA     >  1:2816819/1‑35      GCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGA     >  1:1854292/1‑35      GCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGA     >  1:2277026/1‑35      GCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGA     >  1:70863/1‑35      GCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGA     >  1:1487868/1‑35      GCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGA     >  1:1603037/1‑35      GCTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGA     >  1:1919086/1‑35       CTTTTTGAACAGAGAGCATTTCCGGCAGCAGAGAGAc  <  1:250306/37‑2                ||||||||||||                 GGAAAGCTTTTTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/346441‑346427 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGCAGCAGAGAGAA  >  W3110S.gb/3071050‑3071065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.