| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 346427 = | 37 (1.050) | 40 (1.470) +CAGAGAGCATTT |
5/84 | NT | 55.2% | coding (1241/1587 nt) | prpR | DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 3071050 = | 47 (1.330) | coding (229/1164 nt) | pgk | phosphoglycerate kinase | |||||
CCTGTAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCGCTCGCGCAGT > W3110S.gb/346368‑346477 | ccTGTAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCt < 1:245564/70‑1 (MQ=255)ccTGTAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCt < 1:87576/70‑1 (MQ=255)ccTGTAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCt < 1:2316766/70‑1 (MQ=255)ccTGTAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCt < 1:781498/70‑1 (MQ=255)ccTGTAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCt < 1:1913690/70‑1 (MQ=255)ccTGTAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCt < 1:2565086/70‑1 (MQ=255)ccTGTAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCt < 1:1384816/70‑1 (MQ=255)ccTGTAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCt < 1:669460/70‑1 (MQ=255)ccTGTAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCt < 1:2888960/70‑1 (MQ=255)ccTGTAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCt < 1:2783943/70‑1 (MQ=255)ccTGTAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCt < 1:1520973/70‑1 (MQ=255)ccTGTAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCt < 1:1584812/70‑1 (MQ=255)ccTGTAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCt < 1:306067/70‑1 (MQ=255)ccTGTAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCt < 1:2757019/70‑1 (MQ=255) tAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCg > 1:2571353/1‑71 (MQ=255) gTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGgaata < 1:191711/71‑3 (MQ=255) tAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGgaagaa < 1:2151334/71‑1 (MQ=255) tAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGgaagaa < 1:2471731/71‑1 (MQ=255) tAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGgaagaa < 1:2542141/71‑1 (MQ=255) aaTGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCTGAAGAATATCCGCCAccc > 1:2108314/1‑70 (MQ=255) aaTGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCg > 1:995847/1‑71 (MQ=255) aaTGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCg > 1:3047113/1‑71 (MQ=255) aaTGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCg > 1:242420/1‑71 (MQ=255) aaTGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCg > 1:238496/1‑71 (MQ=255) aaTGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCg > 1:3153601/1‑71 (MQ=255) aaTGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCg > 1:116717/1‑71 (MQ=255) aaTGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCg > 1:2511281/1‑71 (MQ=255) aaTGGGGCGGAGAGCGCCGCCAGAGACACTTACAAAAACCTTTCCGc > 1:2357018/1‑47 (MQ=255) tGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGgaagaa < 1:1219820/56‑1 (MQ=255) gtctctctgctgccggaaatgctctctgTTCAAAAAg < 1:250306‑M1/9‑1 (MQ=255) gtctctctgctgccggaaatgctctctgTTCAAAAAGCttt < 1:2275421‑M1/13‑1 (MQ=255) gtctctctgctgccggaaatgctctctgTTCAAAAAGCttt < 1:623818‑M1/13‑1 (MQ=255) gtctctctgctgccggaaatgctctctgTTCAAAAAGCttt < 1:2148155‑M1/13‑1 (MQ=255) gtctctctgctgccggaaatgctctctgTTCAAAAAGCttt < 1:207056‑M1/13‑1 (MQ=255) gtctctctgctgccggaaatgctctctgTTCAAAAAGCttt < 1:1670888‑M1/13‑1 (MQ=255) gtctctctgctgccggaaatgctctctgTTCAAAAAGCtt < 1:2715688‑M1/12‑1 (MQ=255) gtctctctgctgccggaaatgctctctgTTCAAAAAGCt < 1:2914384‑M1/11‑1 (MQ=255) gtctctctgctgccggaaatgctctctgTTCAAAAAGCt < 1:2490218‑M1/11‑1 (MQ=255) gtctctctgctgccggaaatgctctctgTTCAAAAAGCt < 1:68473‑M1/11‑1 (MQ=255) gtctctctgctgccggaaatgctctctgTTCAAAAAGCt < 1:1007620‑M1/11‑1 (MQ=255) gtctctctgctgccggaaatgctctctgTTCAAAAAGCt < 1:1429991‑M1/11‑1 (MQ=255) gtctctctgctgccggaaatgctctctgTTCAAAAAGCt < 1:1188801‑M1/11‑1 (MQ=255) gtctctctgctgccggaaatgctctctgTTCAAAAAGCt < 1:2105368‑M1/11‑1 (MQ=255) gtctctctgctgccggaaatgctctctgTTAAAAAAGc < 1:868163‑M1/10‑1 (MQ=255) ctctctgctgccggaaatgctctctgTTCAAAAAGCttt < 1:1058098‑M1/13‑1 (MQ=255) tctctgctgccggaaatgctctctgTTCAAAAAgctttta < 1:701668‑M1/15‑3 (MQ=255) tctctgctgccggaaatgctctctgTTCAAAAAGc > 1:1919086‑M1/26‑35 (MQ=255) tctctgctgccggaaatgctctctgTTCAAAAAGc > 1:1603037‑M1/26‑35 (MQ=255) tctctgctgccggaaatgctctctgTTCAAAAAGc > 1:482723‑M1/26‑35 (MQ=255) tctctgctgccggaaatgctctctgTTCAAAAAGc > 1:3005395‑M1/26‑35 (MQ=255) tctctgctgccggaaatgctctctgTTCAAAAAGc > 1:1854292‑M1/26‑35 (MQ=255) tctctgctgccggaaatgctctctgTTCAAAAAGc > 1:1487868‑M1/26‑35 (MQ=255) tctctgctgccggaaatgctctctgTTCAAAAAGc > 1:2816819‑M1/26‑35 (MQ=255) tctctgctgccggaaatgctctctgTTCAAAAAGc > 1:2277026‑M1/26‑35 (MQ=255) tctctgctgccggaaatgctctctgTTCAAAAAGc > 1:70863‑M1/26‑35 (MQ=255) tctctgctgccggaaatgctctctgTTCAAAAAGCttt > 1:983292‑M1/26‑38 (MQ=255) gCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCGCTcgcg < 1:629288/71‑1 (MQ=255) gCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCGCTcgcg < 1:2456387/71‑1 (MQ=255) gCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCGCTcgcg < 1:736113/71‑1 (MQ=255) gCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCGCTcgcg < 1:343811/71‑1 (MQ=255) gCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCGCTcgcg < 1:2774168/71‑1 (MQ=255) ctctgctgccggaaatgctctctgTTCAAAAAGctttt < 1:2541435‑M1/14‑2 (MQ=255) ctctgctgccggaaatgctctctgTTCAAAAAGCt < 1:979296‑M1/11‑1 (MQ=255) ctctgctgccggaaatgctctctgTTCAAAAAGCt < 1:581666‑M1/11‑1 (MQ=255) ctctgctgccggaaatgctctctgTTCAAAAAGCt < 1:2874372‑M1/11‑1 (MQ=255) ctctgctgccggaaatgctctctgTTCAAAAAGCt < 1:2777344‑M1/11‑1 (MQ=255) ctctgctgccggaaatgctctctgTTCAAAAAGCt < 1:1174896‑M1/11‑1 (MQ=255) ctctgctgccggaaatgctctctgTTCAAAAAGCt < 1:719344‑M1/11‑1 (MQ=255) tctgctgccggaaatgctctctgTTCAAAAAGCtt > 1:2722048‑M1/24‑35 (MQ=255) tctgctgccggaaatgctctctgTTCAAAAAGCtt > 1:223640‑M1/24‑35 (MQ=255) tctgctgccggaaatgctctctgTTCAAAAAGCtt > 1:2151783‑M1/24‑35 (MQ=255) tctgctgccggaaatgctctctgTTCAAAAAGCtt > 1:3222627‑M1/24‑35 (MQ=255) tctgctgccggaaatgctctctgTTCAAAAAGCtt > 1:1958707‑M1/24‑35 (MQ=255) tctgctgccggaaatgctctctgTTCAAAAAGCtt > 1:166053‑M1/24‑35 (MQ=255) agagCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCGCTCGCGCAgt < 1:1110385/71‑1 (MQ=255) agagCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCGCTCGCGCAgt < 1:910121/71‑1 (MQ=255) agagCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCGCTCGCGCAgt < 1:1489570/71‑1 (MQ=255) acacTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCGCTCgcgc < 1:191860/53‑1 (MQ=255) acTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCGCTCGCGCAg > 1:2245982/1‑53 (MQ=255) | CCTGTAACCCCTGGCGTAATGCAGCAGAAAATGGGGCGGAGAGCGCCGCCAGAGACACTTTCAAAAAGCTTTCCGCCAGCGGAAGAATATCCGCCACCCGCTCGCGCAGT > W3110S.gb/346368‑346477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |